Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   DQN71_RS08025 Genome accession   NZ_LS483471
Coordinates   1537931..1538593 (+) Length   220 a.a.
NCBI ID   WP_111694575.1    Uniprot ID   -
Organism   Streptococcus cristatus strain NCTC13807     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1535691..1537039 1537931..1538593 flank 892


Gene organization within MGE regions


Location: 1535691..1538593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS08015 - 1535691..1537039 (+) 1349 WP_095666424.1 IS3 family transposase -
  DQN71_RS08020 (NCTC13807_01537) - 1537249..1537764 (-) 516 WP_015605512.1 Dps family protein -
  DQN71_RS08025 (NCTC13807_01538) cclA/cilC 1537931..1538593 (+) 663 WP_111694575.1 prepilin peptidase Machinery gene

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24798.21 Da        Isoelectric Point: 8.2236

>NTDB_id=1142326 DQN71_RS08025 WP_111694575.1 1537931..1538593(+) (cclA/cilC) [Streptococcus cristatus strain NCTC13807]
MIHLYFFLVGTILASFLGLVIDRFPAQSIISPSSHCDNCKQMLKARDLVPILSQLLNGFCCRFCKIRLPIWYAAFELVLG
LLFLSWSLGYLPLAHLLLLTMGLTLAIYDQREQEYPLLIWLIFQFLLMATAGINPLMLFFLTLGLLAFFFDLRIGAGDFL
FLASCSAIFSLTEILILIQIASFSGLACFCFKKKKDRLAFVPCLLFGVVVVISYKLLLLG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1142326 DQN71_RS08025 WP_111694575.1 1537931..1538593(+) (cclA/cilC) [Streptococcus cristatus strain NCTC13807]
ATGATACATCTATACTTTTTTCTGGTCGGAACGATTTTAGCCTCATTTCTAGGCTTGGTCATTGACCGCTTCCCTGCACA
GTCCATCATCTCTCCAAGCAGTCACTGTGACAACTGCAAGCAGATGCTCAAAGCACGGGATTTGGTCCCTATCCTGTCTC
AGTTGCTTAATGGCTTCTGTTGCCGTTTCTGCAAGATCCGCCTTCCTATCTGGTATGCTGCTTTTGAGTTAGTGCTGGGC
TTGCTTTTTCTAAGCTGGAGTTTAGGCTATCTTCCGCTAGCCCATCTCTTACTGCTAACTATGGGCTTGACCTTGGCCAT
CTACGATCAGCGGGAGCAAGAATATCCTCTCCTAATCTGGCTGATTTTTCAGTTCTTGCTGATGGCGACAGCGGGTATCA
ATCCACTCATGCTCTTCTTTCTAACTCTGGGACTTCTAGCCTTCTTTTTTGATCTTCGTATTGGAGCTGGCGACTTTCTA
TTTCTCGCTTCCTGCTCTGCTATTTTCAGCCTAACAGAAATTCTCATTCTTATCCAAATAGCTAGCTTCTCTGGCCTCGC
CTGTTTCTGCTTTAAAAAGAAAAAAGACAGGCTAGCTTTTGTACCCTGTCTTTTGTTTGGTGTTGTGGTGGTTATTTCTT
ATAAGCTGCTGCTTCTTGGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

63.927

99.545

0.636
  cclA/cilC Streptococcus mitis SK321

63.014

99.545

0.627
  cclA/cilC Streptococcus pneumoniae Rx1

62.1

99.545

0.618
  cclA/cilC Streptococcus pneumoniae D39

62.1

99.545

0.618
  cclA/cilC Streptococcus pneumoniae R6

62.1

99.545

0.618
  cclA/cilC Streptococcus pneumoniae TIGR4

61.644

99.545

0.614

Multiple sequence alignment