Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DQN30_RS01350 Genome accession   NZ_LS483458
Coordinates   263319..264848 (-) Length   509 a.a.
NCBI ID   WP_111696054.1    Uniprot ID   A0A2X4R274
Organism   Haemophilus haemolyticus strain NCTC10839     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 258319..269848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN30_RS01330 (NCTC10839_00264) xylB 259486..260967 (+) 1482 WP_172454014.1 xylulokinase -
  DQN30_RS01335 (NCTC10839_00265) rfaD 261018..261944 (-) 927 WP_005636304.1 ADP-glyceromanno-heptose 6-epimerase -
  DQN30_RS01340 (NCTC10839_00266) - 261997..262500 (-) 504 WP_111696052.1 protein disulfide oxidoreductase -
  DQN30_RS01345 (NCTC10839_00267) deoC 262610..263281 (+) 672 WP_111696053.1 deoxyribose-phosphate aldolase -
  DQN30_RS01350 (NCTC10839_00268) comM 263319..264848 (-) 1530 WP_111696054.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DQN30_RS01355 (NCTC10839_00269) yihA 264963..265580 (-) 618 WP_111696055.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DQN30_RS01360 (NCTC10839_00270) - 265684..266550 (+) 867 WP_111696056.1 VirK/YbjX family protein -
  DQN30_RS01365 (NCTC10839_00271) tal 266674..267627 (+) 954 WP_111696057.1 transaldolase -
  DQN30_RS01370 (NCTC10839_00272) aspA 267711..269129 (-) 1419 WP_111696058.1 aspartate ammonia-lyase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55921.52 Da        Isoelectric Point: 9.9541

>NTDB_id=1142177 DQN30_RS01350 WP_111696054.1 263319..264848(-) (comM) [Haemophilus haemolyticus strain NCTC10839]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIARKNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNMLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLSDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1142177 DQN30_RS01350 WP_111696054.1 263319..264848(-) (comM) [Haemophilus haemolyticus strain NCTC10839]
ATGTCCCTTGCTATTGTTTACAGCCGTGCCTCTATGGGTGTGCAAGCACCGCTTGTCACTATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCCGAAAAAACGGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCGCCTGCAGATTTACCGAAAGAAGGTGGACGA
TTTGATTTGCCTATTGCCATCGGGATTTTAGCTGCCTCGGATCAGCTTGATGCGAGCCGTTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTGACGGGGCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCTGCGCAAAAGTCAAAAC
GAGAGTTAATTATCGCGAGGAAAAATGCCAATGAAGCTTCTCTCGTTTCGGATCAAAATACTTATTTTGCGCAAACACTT
TTAGATGTGGTGCAATTTCTCAATGGTCAGGAAAAATTACCACTTGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCGGGCAAAAATATGTTAGATTTAACGGATATTATCGGACAACAACACGCCAAACGAGCATTGACCATTGCCGCCGCTG
GGCAGCATAACTTGCTCTTTCTTGGCCCTCCGGGTACAGGGAAAACCATGTTAGCCAGCCGATTGACAGGGCTTTTACCG
GAAATGACTGATCTAGAAGCGATTGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGCTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCACACCATAGTGCATCAATGCCGGCCTTAGTTGGAGGCGGAACGATCCCCAAACCTGGTG
AAATATCCTTAGCAACAAATGGCGTACTTTTTCTTGATGAGCTTCCAGAATTTGAGCGAAAGGTGTTAGATGCACTACGT
CAGCCTTTAGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCCAAAATCCAATTTCCAGCTCGTTTTCAATTAGTAGC
AGCGATGAACCCAAGCCCGACGGGCCATTATACTGGAACACATAACCGCACTTCACCACAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGACCATTTTTAGATCGTTTTGATTTGTCTATTGAAGTGCCGTTATTGCCACAAGGTAGCTTACAAAAT
ACAGGTGATCGTGGTGAAACCAGCGCGCAAGTACGCGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCGGG
AAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAGTGATAAAGATGCCTTTTTCCTTGAAA
AGGCGCTGAATAAACTTGGGCTTTCTGTTCGGGCCTACCATCGTATTCTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCTTTGGGCTATCGTGCAATGGATCGCTTGCTACAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4R274

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.625

100

0.986
  comM Glaesserella parasuis strain SC1401

78.895

99.607

0.786
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.498

100

0.47

Multiple sequence alignment