Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SHEWBE_RS00550 Genome accession   NZ_LS483452
Coordinates   112334..113857 (+) Length   507 a.a.
NCBI ID   WP_112350839.1    Uniprot ID   A0A330LW81
Organism   Shewanella benthica strain DB21MT-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107334..118857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEWBE_RS00525 (SHEWBE_0114) cyaB 107950..108498 (-) 549 WP_112350830.1 class IV adenylate cyclase -
  SHEWBE_RS00530 (SHEWBE_0116) - 108761..109387 (-) 627 WP_112350831.1 glutathione S-transferase family protein -
  SHEWBE_RS00535 (SHEWBE_0117) - 109399..110085 (-) 687 WP_112350833.1 type 1 glutamine amidotransferase domain-containing protein -
  SHEWBE_RS00540 (SHEWBE_0118) - 110242..111399 (-) 1158 WP_112350835.1 iron-containing alcohol dehydrogenase -
  SHEWBE_RS00545 (SHEWBE_0119) - 111531..112148 (-) 618 WP_112350837.1 TetR/AcrR family transcriptional regulator -
  SHEWBE_RS00550 (SHEWBE_0120) comM 112334..113857 (+) 1524 WP_112350839.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SHEWBE_RS00555 (SHEWBE_0121) - 113950..114855 (+) 906 WP_112350841.1 acyltransferase -
  SHEWBE_RS00560 (SHEWBE_0122) - 114862..115791 (+) 930 WP_112350843.1 acyltransferase -
  SHEWBE_RS00565 (SHEWBE_0123) - 115893..116981 (-) 1089 WP_112350845.1 branched-chain amino acid aminotransferase -
  SHEWBE_RS00570 (SHEWBE_0124) - 117142..117549 (-) 408 WP_231926379.1 hypothetical protein -
  SHEWBE_RS00575 (SHEWBE_0125) - 117614..117859 (+) 246 WP_145981844.1 hypothetical protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55426.09 Da        Isoelectric Point: 9.2472

>NTDB_id=1142111 SHEWBE_RS00550 WP_112350839.1 112334..113857(+) (comM) [Shewanella benthica strain DB21MT-2]
MAIACVATRANKGVDAPPVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSAIINAGFEFPIRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPKNALKDHEFVGELALSGHIKHCQGLLPVIVEARKLGIHLVIPLDNRADAELVGFNKVFFATHL
QGLSEYLHGQTRLPGIEPGLKWIEAEDIDTHLCFSDVIGQYHAKLGLEIAAAGNHNVLLLGPPGTGKSMLANRLMQLLPP
LNYDEALEVATLHSVAGQSIEPKSFYKRPFRNPHHTSSAVSLVGGGTHPKPGEISLAHRGVLFLDEVVEFPRKVLDCLRE
PMESGEVVISRAAAKLKFSSRFQLIAAMNPSPCGDIDNARATPDQIQRYLSRLSGPFLDRFDLSIEVPRLPPGALTKSEP
STETSVSIALRVKMARESQLARAGVLNSDLTGKQLKQLGQFKQVDLLFLEMSVNKLGLSVRSYHRLQRVARTIADLQQSV
TVERRHIAQALGYRAMDRLLNNLKAQY

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1142111 SHEWBE_RS00550 WP_112350839.1 112334..113857(+) (comM) [Shewanella benthica strain DB21MT-2]
ATGGCCATCGCCTGTGTCGCCACCAGAGCCAATAAGGGAGTCGACGCCCCTCCCGTTACCGTCGAAGTTCATCTCAGCAA
TGGCTTACCCGCATTCAATCTGGTTGGATTGCCAGAGACCTCGGTCAAGGAGGCCAAAGAGCGTGTTCGCAGCGCGATTA
TTAATGCGGGATTCGAATTCCCCATACGCCGTATCACAGTAAACCTGGCACCGGCAGATCTCCCTAAGCAAGGTGGTCGT
TACGATCTACCCATTGCCATCGGCATTCTGGCAGCATCGGAACAAATCCCCAAAAACGCACTAAAAGATCATGAGTTTGT
TGGCGAGTTAGCCCTGTCTGGCCATATAAAGCATTGCCAGGGCCTGCTACCTGTCATTGTTGAGGCGCGAAAACTAGGTA
TCCATCTGGTGATCCCGCTGGATAATCGAGCCGATGCCGAATTAGTCGGCTTCAATAAGGTCTTTTTTGCTACTCACCTG
CAAGGTTTAAGCGAATACCTGCACGGACAAACGAGATTGCCCGGCATAGAGCCTGGGCTGAAGTGGATAGAAGCGGAAGA
TATCGACACGCATCTCTGCTTTAGCGATGTCATCGGTCAATATCATGCCAAGCTAGGGTTGGAAATCGCCGCGGCCGGCA
ATCATAACGTGCTCTTACTCGGGCCTCCGGGAACCGGCAAGAGCATGCTTGCCAATCGCTTGATGCAGTTATTACCACCA
CTTAACTATGATGAAGCCCTGGAGGTCGCCACCTTACATTCGGTAGCGGGCCAATCCATCGAGCCCAAATCCTTTTACAA
ACGTCCCTTTCGCAACCCCCATCACACCAGTTCGGCGGTCTCTTTGGTTGGTGGCGGCACACATCCTAAACCTGGCGAGA
TATCTTTGGCTCACAGGGGAGTACTCTTCCTCGACGAAGTGGTCGAATTTCCTCGAAAAGTCCTCGACTGTCTGCGTGAG
CCCATGGAAAGTGGCGAGGTGGTCATCTCCCGCGCCGCGGCCAAGCTTAAATTTTCCAGCCGCTTTCAATTGATAGCGGC
GATGAACCCGAGTCCATGTGGCGATATCGATAATGCCAGAGCTACGCCAGATCAGATACAAAGATACCTATCTCGCTTAT
CTGGTCCCTTCTTAGACAGGTTCGATCTCTCCATAGAGGTCCCTCGCCTCCCACCAGGAGCCCTGACAAAATCCGAGCCC
TCGACAGAAACCAGTGTATCCATAGCACTGCGAGTAAAGATGGCCAGAGAGTCACAACTGGCACGAGCGGGAGTGCTCAA
TAGTGATTTAACCGGCAAGCAGCTTAAACAGTTAGGGCAATTCAAACAGGTCGATCTGCTTTTTCTGGAGATGAGCGTCA
ACAAATTAGGTTTATCGGTAAGAAGCTATCATCGCCTGCAAAGAGTCGCACGCACCATCGCCGACTTACAGCAAAGTGTA
ACGGTCGAACGCAGACACATAGCTCAGGCCCTAGGCTACAGGGCCATGGATCGACTGTTAAATAACTTGAAGGCGCAATA
TTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A330LW81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.118

100

0.552
  comM Haemophilus influenzae Rd KW20

54.118

100

0.544
  comM Vibrio campbellii strain DS40M4

54.224

100

0.544
  comM Glaesserella parasuis strain SC1401

52.849

100

0.531
  comM Legionella pneumophila str. Paris

50.2

98.619

0.495
  comM Legionella pneumophila strain ERS1305867

50.2

98.619

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.2

98.619

0.416

Multiple sequence alignment