Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | DQN58_RS00410 | Genome accession | NZ_LS483443 |
| Coordinates | 73976..74305 (+) | Length | 109 a.a. |
| NCBI ID | WP_006719264.1 | Uniprot ID | E6KZK4 |
| Organism | Aggregatibacter segnis ATCC 33393 strain NCTC 10977 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 68976..79305
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN58_RS00390 (NCTC10977_00076) | - | 71210..71965 (-) | 756 | WP_006719259.1 | DeoR/GlpR family transcriptional regulator | - |
| DQN58_RS00395 (NCTC10977_00077) | - | 72030..72905 (-) | 876 | WP_006719260.1 | rhomboid family intramembrane serine protease | - |
| DQN58_RS00400 (NCTC10977_00078) | - | 72947..73261 (+) | 315 | WP_006719261.1 | DUF5389 domain-containing protein | - |
| DQN58_RS00405 (NCTC10977_00079) | glpE | 73258..73584 (-) | 327 | WP_006719262.1 | thiosulfate sulfurtransferase GlpE | - |
| DQN58_RS00410 (NCTC10977_00080) | comE1/comEA | 73976..74305 (+) | 330 | WP_006719264.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| DQN58_RS00415 (NCTC10977_00081) | rdgB | 74427..75026 (+) | 600 | WP_006719265.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| DQN58_RS00420 (NCTC10977_00082) | - | 75066..75389 (+) | 324 | WP_006719266.1 | YbjQ family protein | - |
| DQN58_RS00425 (NCTC10977_00083) | hemW | 75389..76558 (+) | 1170 | WP_006719267.1 | radical SAM family heme chaperone HemW | - |
| DQN58_RS00430 (NCTC10977_00084) | rpiA | 76659..77315 (+) | 657 | WP_006719268.1 | ribose-5-phosphate isomerase RpiA | - |
| DQN58_RS00435 (NCTC10977_00085) | serA | 77334..78566 (+) | 1233 | WP_006719269.1 | phosphoglycerate dehydrogenase | - |
| DQN58_RS00440 (NCTC10977_00086) | - | 78633..79274 (-) | 642 | WP_032997981.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 11417.25 Da Isoelectric Point: 10.0532
>NTDB_id=1141680 DQN58_RS00410 WP_006719264.1 73976..74305(+) (comE1/comEA) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
MKVMKHLLASLFVLGTVFTGTAMAAEKAAEPAAQTEQPAATAAVSQKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GAFSAVEQLLEVQGIGKATLEKNRDRIAL
MKVMKHLLASLFVLGTVFTGTAMAAEKAAEPAAQTEQPAATAAVSQKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GAFSAVEQLLEVQGIGKATLEKNRDRIAL
Nucleotide
Download Length: 330 bp
>NTDB_id=1141680 DQN58_RS00410 WP_006719264.1 73976..74305(+) (comE1/comEA) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
ATGAAAGTAATGAAACATCTTTTGGCTTCTCTGTTCGTGTTAGGAACGGTGTTTACCGGCACTGCCATGGCAGCAGAAAA
GGCGGCAGAACCTGCAGCGCAAACAGAGCAACCTGCCGCAACGGCCGCTGTTAGCCAGAAAGTCAACATCAACACGGCCT
CTGCCGCCGAAATTCAAAAAGCGCTTGTGGGTATTGGCGCGAAAAAAGCGGAAGCCGTCGTGCAATACCGTGAAAAACAC
GGGGCGTTTAGTGCTGTCGAGCAATTATTAGAAGTGCAAGGTATCGGCAAAGCTACGCTCGAAAAAAATCGCGATCGCAT
CGCACTTTAA
ATGAAAGTAATGAAACATCTTTTGGCTTCTCTGTTCGTGTTAGGAACGGTGTTTACCGGCACTGCCATGGCAGCAGAAAA
GGCGGCAGAACCTGCAGCGCAAACAGAGCAACCTGCCGCAACGGCCGCTGTTAGCCAGAAAGTCAACATCAACACGGCCT
CTGCCGCCGAAATTCAAAAAGCGCTTGTGGGTATTGGCGCGAAAAAAGCGGAAGCCGTCGTGCAATACCGTGAAAAACAC
GGGGCGTTTAGTGCTGTCGAGCAATTATTAGAAGTGCAAGGTATCGGCAAAGCTACGCTCGAAAAAAATCGCGATCGCAT
CGCACTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60.909 |
100 |
0.615 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.982 |
100 |
0.56 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
42.453 |
97.248 |
0.413 |
| comEA | Vibrio cholerae C6706 |
41.509 |
97.248 |
0.404 |
| comEA | Vibrio cholerae strain A1552 |
41.509 |
97.248 |
0.404 |