Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DQN45_RS09130 Genome accession   NZ_LS483438
Coordinates   1834585..1834932 (-) Length   115 a.a.
NCBI ID   WP_038440076.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12975     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829585..1839932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN45_RS09110 (NCTC12975_01814) bioB 1829974..1830975 (-) 1002 WP_005647862.1 biotin synthase BioB -
  DQN45_RS09115 (NCTC12975_01815) thiQ 1831088..1831735 (-) 648 WP_005655984.1 thiamine ABC transporter ATP-binding protein -
  DQN45_RS09120 (NCTC12975_01816) thiP 1831719..1833335 (-) 1617 WP_042593741.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DQN45_RS09125 (NCTC12975_01817) thiB 1833340..1834338 (-) 999 WP_042593740.1 thiamine ABC transporter substrate binding subunit -
  DQN45_RS09130 (NCTC12975_01819) comE1/comEA 1834585..1834932 (-) 348 WP_038440076.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQN45_RS09135 (NCTC12975_01820) ispH 1835101..1836045 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DQN45_RS09140 (NCTC12975_01821) lspA 1836042..1836557 (-) 516 WP_042593739.1 signal peptidase II -
  DQN45_RS09145 (NCTC12975_01822) - 1836627..1838186 (-) 1560 WP_042593738.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12307.12 Da        Isoelectric Point: 8.0085

>NTDB_id=1141570 DQN45_RS09130 WP_038440076.1 1834585..1834932(-) (comE1/comEA) [Haemophilus influenzae strain NCTC12975]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1141570 DQN45_RS09130 WP_038440076.1 1834585..1834932(-) (comE1/comEA) [Haemophilus influenzae strain NCTC12975]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio cholerae C6706

42.727

95.652

0.409
  comEA Vibrio cholerae strain A1552

42.727

95.652

0.409
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment