Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPOKI112_RS00215 | Genome accession | NZ_CP006821 |
| Coordinates | 39025..40161 (+) | Length | 378 a.a. |
| NCBI ID | WP_025275454.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki112 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34025..45161
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI112_RS00180 (HPOKI112_00200) | panD | 34456..34806 (+) | 351 | WP_025276548.1 | aspartate 1-decarboxylase | - |
| HPOKI112_RS00185 (HPOKI112_00205) | - | 34817..35110 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPOKI112_RS00190 (HPOKI112_00210) | - | 35110..36105 (+) | 996 | WP_025275450.1 | PDZ domain-containing protein | - |
| HPOKI112_RS00195 (HPOKI112_00215) | comB6 | 36113..37168 (+) | 1056 | WP_025275451.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPOKI112_RS00200 (HPOKI112_00220) | comB7 | 37184..37297 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPOKI112_RS00205 (HPOKI112_00225) | comB8 | 37294..38037 (+) | 744 | WP_025309528.1 | type IV secretion system protein | Machinery gene |
| HPOKI112_RS00210 (HPOKI112_00230) | comB9 | 38037..39032 (+) | 996 | WP_025276550.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPOKI112_RS00215 (HPOKI112_00235) | comB10 | 39025..40161 (+) | 1137 | WP_025275454.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPOKI112_RS00220 (HPOKI112_00240) | - | 40231..41649 (+) | 1419 | WP_025276552.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPOKI112_RS00225 (HPOKI112_00245) | gmd | 41659..42804 (+) | 1146 | WP_025275456.1 | GDP-mannose 4,6-dehydratase | - |
| HPOKI112_RS00230 (HPOKI112_00250) | - | 42797..43729 (+) | 933 | WP_025275457.1 | GDP-L-fucose synthase family protein | - |
| HPOKI112_RS00240 (HPOKI112_00260) | hypE | 44043..45041 (-) | 999 | WP_025275458.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42056.57 Da Isoelectric Point: 9.9312
>NTDB_id=114144 HPOKI112_RS00215 WP_025275454.1 39025..40161(+) (comB10) [Helicobacter pylori oki112]
MNKWLKGAVVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDLKANTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNSRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAVVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDLKANTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNSRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=114144 HPOKI112_RS00215 WP_025275454.1 39025..40161(+) (comB10) [Helicobacter pylori oki112]
ATGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAAGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAGGGGGCGGACATTAAAGGTTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTGTTGATTG
GGATCACTTCGGCTTTAAACAGCAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAAGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAGGGGGCGGACATTAAAGGTTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTGTTGATTG
GGATCACTTCGGCTTTAAACAGCAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.825 |
100 |
0.968 |