Detailed information NTG0114143

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOKI112_RS00210
• Genome accession: NZ_CP006821
• Coordinates: 38037..39032 (+)
• Length: 331 a.a.
• NCBI ID: WP_025276550.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki112
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33037..44032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI112_RS00180 (HPOKI112_00200)	panD	34456..34806 (+)	351	WP_025276548.1	aspartate 1-decarboxylase	-
HPOKI112_RS00185 (HPOKI112_00205)	-	34817..35110 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI112_RS00190 (HPOKI112_00210)	-	35110..36105 (+)	996	WP_025275450.1	PDZ domain-containing protein	-
HPOKI112_RS00195 (HPOKI112_00215)	comB6	36113..37168 (+)	1056	WP_025275451.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI112_RS00200 (HPOKI112_00220)	comB7	37184..37297 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPOKI112_RS00205 (HPOKI112_00225)	comB8	37294..38037 (+)	744	WP_025309528.1	type IV secretion system protein	Machinery gene
HPOKI112_RS00210 (HPOKI112_00230)	comB9	38037..39032 (+)	996	WP_025276550.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI112_RS00215 (HPOKI112_00235)	comB10	39025..40161 (+)	1137	WP_025275454.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI112_RS00220 (HPOKI112_00240)	-	40231..41649 (+)	1419	WP_025276552.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI112_RS00225 (HPOKI112_00245)	gmd	41659..42804 (+)	1146	WP_025275456.1	GDP-mannose 4,6-dehydratase	-
HPOKI112_RS00230 (HPOKI112_00250)	-	42797..43729 (+)	933	WP_025275457.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 38150.94 Da
• Isoelectric Point: 9.3329

>NTDB_id=114143 HPOKI112_RS00210 WP_025276550.1 38037..39032(+) (comB9) [Helicobacter pylori oki112]
MRKFLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENALENAPTNNKPLKEEPLKEEKEETKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKW
YCLGICSKKSKPSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYL
CIRFVKKGKDE

Nucleotide

• Length: 996 bp

>NTDB_id=114143 HPOKI112_RS00210 WP_025276550.1 38037..39032(+) (comB9) [Helicobacter pylori oki112]
ATGCGGAAATTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATATTAGAAAG
TAACGATCGTATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTATGAAGCCACAAAATAAAGAAAATGCCCTTGAAAATGCCCTTGAAAATGCCCCCACAAACAA
CAAGCCCTTAAAAGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCG
ATAACACTAACGCCATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGG
TATTGTTTAGGGATTTGTTCTAAAAAATCCAAACCCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTA
TTTCAAATTTGACAAAAAATTAGCACTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAA
ATACTAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTG
TGCATCCGTTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.864	100	0.949