Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPOKI112_RS00200 | Genome accession | NZ_CP006821 |
| Coordinates | 37184..37297 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori oki112 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32184..42297
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI112_RS00175 (HPOKI112_00195) | - | 32241..34466 (+) | 2226 | WP_025309527.1 | AAA family ATPase | - |
| HPOKI112_RS00180 (HPOKI112_00200) | panD | 34456..34806 (+) | 351 | WP_025276548.1 | aspartate 1-decarboxylase | - |
| HPOKI112_RS00185 (HPOKI112_00205) | - | 34817..35110 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPOKI112_RS00190 (HPOKI112_00210) | - | 35110..36105 (+) | 996 | WP_025275450.1 | PDZ domain-containing protein | - |
| HPOKI112_RS00195 (HPOKI112_00215) | comB6 | 36113..37168 (+) | 1056 | WP_025275451.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPOKI112_RS00200 (HPOKI112_00220) | comB7 | 37184..37297 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPOKI112_RS00205 (HPOKI112_00225) | comB8 | 37294..38037 (+) | 744 | WP_025309528.1 | type IV secretion system protein | Machinery gene |
| HPOKI112_RS00210 (HPOKI112_00230) | comB9 | 38037..39032 (+) | 996 | WP_025276550.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPOKI112_RS00215 (HPOKI112_00235) | comB10 | 39025..40161 (+) | 1137 | WP_025275454.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPOKI112_RS00220 (HPOKI112_00240) | - | 40231..41649 (+) | 1419 | WP_025276552.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=114141 HPOKI112_RS00200 WP_001217873.1 37184..37297(+) (comB7) [Helicobacter pylori oki112]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=114141 HPOKI112_RS00200 WP_001217873.1 37184..37297(+) (comB7) [Helicobacter pylori oki112]
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |