Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPOKI112_RS00205 Genome accession   NZ_CP006821
Coordinates   37294..38037 (+) Length   247 a.a.
NCBI ID   WP_025309528.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32294..43037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS00180 (HPOKI112_00200) panD 34456..34806 (+) 351 WP_025276548.1 aspartate 1-decarboxylase -
  HPOKI112_RS00185 (HPOKI112_00205) - 34817..35110 (+) 294 WP_000347915.1 YbaB/EbfC family nucleoid-associated protein -
  HPOKI112_RS00190 (HPOKI112_00210) - 35110..36105 (+) 996 WP_025275450.1 PDZ domain-containing protein -
  HPOKI112_RS00195 (HPOKI112_00215) comB6 36113..37168 (+) 1056 WP_025275451.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOKI112_RS00200 (HPOKI112_00220) comB7 37184..37297 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPOKI112_RS00205 (HPOKI112_00225) comB8 37294..38037 (+) 744 WP_025309528.1 type IV secretion system protein Machinery gene
  HPOKI112_RS00210 (HPOKI112_00230) comB9 38037..39032 (+) 996 WP_025276550.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOKI112_RS00215 (HPOKI112_00235) comB10 39025..40161 (+) 1137 WP_025275454.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOKI112_RS00220 (HPOKI112_00240) - 40231..41649 (+) 1419 WP_025276552.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOKI112_RS00225 (HPOKI112_00245) gmd 41659..42804 (+) 1146 WP_025275456.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28770.96 Da        Isoelectric Point: 8.9546

>NTDB_id=114142 HPOKI112_RS00205 WP_025309528.1 37294..38037(+) (comB8) [Helicobacter pylori oki112]
MKEKPFNSEQLNYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=114142 HPOKI112_RS00205 WP_025309528.1 37294..38037(+) (comB8) [Helicobacter pylori oki112]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGAACTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGCTGGAAAGAAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTAGAAAGAGAGGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGCACTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment