Detailed information NTG0114140

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOKI112_RS00195
• Genome accession: NZ_CP006821
• Coordinates: 36113..37168 (+)
• Length: 351 a.a.
• NCBI ID: WP_025275451.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki112
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31113..42168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI112_RS00165 (HPOKI112_00185)	-	31530..31943 (+)	414	WP_001023008.1	universal stress protein	-
HPOKI112_RS00170 (HPOKI112_00190)	-	31966..32241 (+)	276	WP_025276546.1	ATP-dependent Clp protease adaptor ClpS	-
HPOKI112_RS00175 (HPOKI112_00195)	-	32241..34466 (+)	2226	WP_025309527.1	AAA family ATPase	-
HPOKI112_RS00180 (HPOKI112_00200)	panD	34456..34806 (+)	351	WP_025276548.1	aspartate 1-decarboxylase	-
HPOKI112_RS00185 (HPOKI112_00205)	-	34817..35110 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI112_RS00190 (HPOKI112_00210)	-	35110..36105 (+)	996	WP_025275450.1	PDZ domain-containing protein	-
HPOKI112_RS00195 (HPOKI112_00215)	comB6	36113..37168 (+)	1056	WP_025275451.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI112_RS00200 (HPOKI112_00220)	comB7	37184..37297 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPOKI112_RS00205 (HPOKI112_00225)	comB8	37294..38037 (+)	744	WP_025309528.1	type IV secretion system protein	Machinery gene
HPOKI112_RS00210 (HPOKI112_00230)	comB9	38037..39032 (+)	996	WP_025276550.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI112_RS00215 (HPOKI112_00235)	comB10	39025..40161 (+)	1137	WP_025275454.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI112_RS00220 (HPOKI112_00240)	-	40231..41649 (+)	1419	WP_025276552.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39764.68 Da
• Isoelectric Point: 9.0413

>NTDB_id=114140 HPOKI112_RS00195 WP_025275451.1 36113..37168(+) (comB6) [Helicobacter pylori oki112]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLESLWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=114140 HPOKI112_RS00195 WP_025275451.1 36113..37168(+) (comB6) [Helicobacter pylori oki112]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGAAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCACTTTTAGAATCGTTATGGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGAAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAATAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAAGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954