Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   DQN79_RS03920 Genome accession   NZ_LS483435
Coordinates   763962..764528 (-) Length   188 a.a.
NCBI ID   WP_003772458.1    Uniprot ID   D4DRI6
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758962..769528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS03895 (NCTC11050_00729) mlaE 759416..760192 (-) 777 WP_003772451.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  DQN79_RS03900 (NCTC11050_00730) - 760255..761055 (-) 801 WP_003772452.1 ABC transporter ATP-binding protein -
  DQN79_RS03905 (NCTC11050_00731) apbC 761344..762423 (+) 1080 WP_041961261.1 iron-sulfur cluster carrier protein ApbC -
  DQN79_RS03910 (NCTC11050_00732) - 762540..763331 (-) 792 WP_003772456.1 hypothetical protein -
  DQN79_RS03915 (NCTC11050_00733) - 763361..763891 (-) 531 WP_040665936.1 pilin -
  DQN79_RS03920 (NCTC11050_00734) pilE 763962..764528 (-) 567 WP_003772458.1 pilin Machinery gene
  DQN79_RS03925 (NCTC11050_00735) - 765114..766211 (-) 1098 WP_003772463.1 NnrS family protein -
  DQN79_RS03930 (NCTC11050_00736) - 766507..767121 (-) 615 WP_003772465.1 CadD family cadmium resistance transporter -
  DQN79_RS03935 (NCTC11050_00737) - 767432..768124 (-) 693 WP_174428826.1 ATP-binding cassette domain-containing protein -
  DQN79_RS03940 (NCTC11050_00738) - 768124..768921 (-) 798 WP_041961262.1 ABC transporter permease -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 18864.68 Da        Isoelectric Point: 9.4112

>NTDB_id=1141396 DQN79_RS03920 WP_003772458.1 763962..764528(-) (pilE) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MKAMQKGFTLIELMIVIAIIGILAAIALPAYQDYTVRSKVSEALIAASSPKSALSEAFQTDGITGMTAAAKAFNKTAAAG
GGAGGAAAAGTQHASKYVKSVKVTEASPWDITVAISATEANGIPTGLDGNTIRLFPLVNKAVPAATSTGAIDWACASAAK
ETADKRFGTGSGVAVGTLPAKYAPSECK

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1141396 DQN79_RS03920 WP_003772458.1 763962..764528(-) (pilE) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAAAGCAATGCAAAAAGGTTTCACCCTGATCGAGTTGATGATCGTAATCGCCATTATCGGTATTTTGGCTGCTATCGC
CCTGCCGGCTTACCAAGACTACACTGTACGTTCTAAAGTTTCCGAAGCTTTGATCGCTGCTTCTTCTCCGAAGTCTGCTC
TGTCTGAAGCTTTCCAAACTGACGGCATTACCGGTATGACTGCAGCTGCCAAAGCATTTAACAAAACCGCTGCTGCTGGT
GGTGGTGCTGGTGGTGCTGCTGCTGCTGGTACTCAACATGCATCCAAATATGTTAAAAGCGTGAAAGTTACTGAAGCTAG
CCCATGGGATATTACCGTAGCCATTTCCGCTACAGAGGCAAACGGTATTCCGACTGGTTTAGACGGAAATACAATCAGAC
TGTTCCCGTTGGTTAATAAAGCGGTTCCGGCAGCAACTTCTACCGGCGCGATTGACTGGGCTTGTGCTTCTGCAGCAAAA
GAAACTGCGGATAAACGTTTCGGTACTGGTTCTGGCGTTGCTGTTGGTACCTTGCCTGCCAAATACGCTCCTTCTGAGTG
CAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DRI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

100

100

1
  comP Acinetobacter baylyi ADP1

38.587

97.872

0.378
  pilA2 Legionella pneumophila str. Paris

37.566

100

0.378
  pilA2 Legionella pneumophila strain ERS1305867

38.043

97.872

0.372
  pilA Ralstonia pseudosolanacearum GMI1000

35.602

100

0.362

Multiple sequence alignment