Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DQN52_RS05905 Genome accession   NZ_LS483426
Coordinates   1084094..1086196 (+) Length   700 a.a.
NCBI ID   WP_003785828.1    Uniprot ID   -
Organism   Kingella kingae strain NCTC10529     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1079094..1091196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS05885 (NCTC10529_01149) pilM 1081106..1082209 (+) 1104 WP_003785822.1 type IV pilus biogenesis protein PilM -
  DQN52_RS05890 (NCTC10529_01150) - 1082211..1082870 (+) 660 WP_003785824.1 PilN domain-containing protein -
  DQN52_RS05895 (NCTC10529_01151) - 1082873..1083496 (+) 624 WP_003785825.1 type 4a pilus biogenesis protein PilO -
  DQN52_RS05900 (NCTC10529_01152) pilP 1083530..1084060 (+) 531 WP_003785826.1 pilus assembly protein PilP Machinery gene
  DQN52_RS05905 (NCTC10529_01153) pilQ 1084094..1086196 (+) 2103 WP_003785828.1 type IV pilus secretin PilQ Machinery gene
  DQN52_RS05910 (NCTC10529_01154) - 1086253..1086765 (+) 513 WP_111694434.1 shikimate kinase -
  DQN52_RS05915 (NCTC10529_01155) aroB 1086765..1087847 (+) 1083 WP_003785833.1 3-dehydroquinate synthase -
  DQN52_RS05920 (NCTC10529_01156) - 1087866..1088282 (+) 417 WP_003785834.1 ProQ/FINO family protein -
  DQN52_RS05925 (NCTC10529_01157) mutL 1088362..1090236 (-) 1875 WP_003785835.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 76297.99 Da        Isoelectric Point: 9.3714

>NTDB_id=1141186 DQN52_RS05905 WP_003785828.1 1084094..1086196(+) (pilQ) [Kingella kingae strain NCTC10529]
MKKNSLEALSVLSLSMVMQAAFAGNITDINVSVLPDQQRVIKLKFDSAPVEPTGFTTATPARIALDFPGTSVKVPQAALS
FNDALLNQIIAAQNDNNARILLGLAKEGQYNAQVRGNEVWIYVSESKSTNTATVHQASAADNSAANYTPAAATSGFNVDF
RKGGQNSGLVEFSSAYTGQPQVKVQSDRLVITLKNYPLATQDQRNFDVTDFSTPVRTVTVKRIGNDTQITIRNQGSWEHK
VTQSNGRHVIQVLPTRNVAESAANGKRAQQNFTGKRISLDFQNIEVRTVLQILAQESGMNIVASDSVQGKMTLSLKDVPW
DQALDLVMDARNLDMRKHGNIINIAPRQELLDKDRNEAKARREMEDLGALYSKTFQLKYKNVEEFKNILRLSDSPNTNDR
SNILSTRGSALIDPATNTLIVTDNQSVIQKFERLIDELDVPAKQVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW
NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENLTKTISTPRVLTQDRKEAEIR
QGTQIPYTTRSSDGDSSTAFKDAVLSLKVTPRITPDSKIILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATL
VVGGIYQEQMANNVSKVPLLGDIPVLGNLFKSRSRSRSRNELLFFITPRIMGAESSVLRY

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=1141186 DQN52_RS05905 WP_003785828.1 1084094..1086196(+) (pilQ) [Kingella kingae strain NCTC10529]
ATGAAAAAGAATTCATTGGAAGCATTGTCAGTACTAAGTTTGAGCATGGTAATGCAGGCTGCTTTTGCAGGAAATATTAC
GGATATCAATGTATCGGTACTACCTGACCAGCAACGAGTAATTAAATTAAAATTTGATAGTGCACCTGTTGAACCTACTG
GTTTTACTACAGCCACGCCTGCTCGTATTGCTTTGGATTTCCCAGGTACGAGTGTTAAAGTTCCCCAAGCAGCTTTGAGT
TTTAATGATGCATTGTTGAATCAAATTATTGCTGCGCAAAATGATAATAATGCACGTATTTTGTTAGGCTTGGCAAAAGA
AGGTCAATATAATGCTCAAGTTCGCGGTAATGAAGTATGGATTTATGTAAGCGAATCAAAATCAACCAATACAGCGACAG
TTCATCAAGCATCTGCTGCGGATAATTCTGCTGCAAACTACACGCCAGCAGCAGCTACATCTGGTTTTAATGTGGACTTC
CGCAAAGGTGGACAAAATTCGGGTTTGGTTGAATTTTCATCAGCCTATACTGGTCAGCCGCAGGTTAAAGTGCAATCGGA
TCGTTTGGTTATTACTTTGAAAAACTATCCGTTGGCTACGCAAGATCAGCGCAATTTCGATGTAACTGATTTTTCAACAC
CAGTTCGCACAGTTACCGTTAAACGTATTGGCAATGATACGCAGATTACGATTCGTAACCAAGGTAGCTGGGAACATAAG
GTCACTCAAAGCAATGGTCGCCATGTAATTCAAGTACTACCTACGCGCAATGTGGCAGAATCAGCTGCCAATGGTAAACG
TGCACAGCAAAATTTCACAGGCAAACGTATTTCGTTAGACTTTCAAAATATTGAAGTTCGTACTGTTTTGCAAATTTTGG
CACAAGAATCAGGTATGAATATCGTAGCCAGTGATAGTGTGCAAGGCAAAATGACATTGTCATTAAAAGATGTGCCTTGG
GATCAAGCCTTGGATTTGGTAATGGATGCGCGTAATTTGGATATGCGTAAACATGGCAATATTATTAACATTGCGCCACG
CCAAGAATTGCTGGATAAAGACCGCAATGAAGCAAAAGCACGCCGAGAAATGGAAGATTTGGGTGCGTTGTATTCCAAAA
CATTTCAGTTGAAATACAAAAATGTGGAAGAATTCAAAAATATTTTACGTTTGAGTGATTCACCAAATACTAACGACAGA
AGTAACATTTTAAGTACTCGTGGTAGTGCCTTGATTGACCCTGCAACTAACACTTTGATTGTAACTGATAACCAATCTGT
TATTCAGAAATTTGAGCGATTGATTGATGAGTTGGACGTTCCTGCTAAACAAGTAATGGTAGAAGCGCGTATTGTGGAAG
CTGCTGATGGTGTATCACGAAGTTTGGGTGTCAAGTTTGGTGCTCGTCGTAATGGTGCAACATCATGGGGTGGAGACTGG
AATAACAGTATCGCATTGAATAATCGCTCTACTAATTCTGGTACATCAACTGGTGGTGTTGCTTTCAATCCAAATGTAAA
CTTGCCTGTTGCTTCTGCGACTAGCTCTATTTCGGTGATCCATTCTTGGGCTGCTGGTGCATTGGGCTTAGAATTATCTG
CGATGGAAACAGAGAATTTAACTAAAACAATTTCAACTCCTCGAGTTTTGACACAAGACCGTAAAGAGGCAGAAATTCGT
CAAGGTACACAAATTCCTTATACTACTCGCAGCAGTGATGGCGATAGTAGTACGGCATTTAAAGATGCAGTGTTGAGCTT
AAAAGTAACGCCACGTATTACGCCTGACAGCAAAATTATCTTGGATATTGCGATTAACAAAGATGAACCTGATTACAATA
ATGTAAATGCCGAAGGTGAACCAGGTATTGTCACTCGTGCAGTTAAAACGCAAGCAATGATTGAAGATGGTGCAACCTTG
GTTGTGGGTGGTATTTATCAAGAACAAATGGCTAATAACGTTAGCAAAGTACCTTTATTGGGCGATATCCCAGTATTGGG
TAATTTGTTTAAATCTCGCTCGCGTAGCCGTAGTCGCAATGAATTGCTGTTCTTCATCACGCCACGCATTATGGGGGCGG
AAAGCAGTGTATTGCGCTACTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(36-115)

Bacterial type II and III secretion system protein (Secretin)

(534-691)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

52.089

100

0.534
  pilQ Neisseria meningitidis MC58

55.415

79.143

0.439
  pilQ Neisseria meningitidis M1080

55.054

79.143

0.436

Multiple sequence alignment