Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DQN52_RS02225 Genome accession   NZ_LS483426
Coordinates   404541..405728 (-) Length   395 a.a.
NCBI ID   WP_032827817.1    Uniprot ID   -
Organism   Kingella kingae strain NCTC10529     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 399541..410728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS02190 (NCTC10529_00428) - 399716..401134 (+) 1419 WP_003788172.1 sodium:alanine symporter family protein -
  DQN52_RS02200 (NCTC10529_00430) - 401294..402268 (-) 975 WP_003788170.1 polyprenyl synthetase family protein -
  DQN52_RS02205 (NCTC10529_00431) rpmA 402387..402659 (-) 273 WP_003788168.1 50S ribosomal protein L27 -
  DQN52_RS02210 (NCTC10529_00432) rplU 402685..402990 (-) 306 WP_003792048.1 50S ribosomal protein L21 -
  DQN52_RS02215 (NCTC10529_00433) - 403093..403980 (-) 888 WP_003788164.1 polyprenyl synthetase family protein -
  DQN52_RS02220 (NCTC10529_00434) xseB 403973..404200 (-) 228 WP_003788162.1 exodeoxyribonuclease VII small subunit -
  DQN52_RS02225 (NCTC10529_00435) dprA 404541..405728 (-) 1188 WP_032827817.1 DNA-processing protein DprA Machinery gene
  DQN52_RS02230 (NCTC10529_00436) tsaA 405874..406560 (-) 687 WP_032133005.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  DQN52_RS02235 (NCTC10529_00437) - 406640..407197 (-) 558 WP_003788155.1 porin family protein -
  DQN52_RS02240 (NCTC10529_00438) mnmE 407308..408687 (+) 1380 WP_003788153.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  DQN52_RS02245 (NCTC10529_00439) gap 409036..410040 (-) 1005 WP_003788149.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 42417.77 Da        Isoelectric Point: 5.3009

>NTDB_id=1141178 DQN52_RS02225 WP_032827817.1 404541..405728(-) (dprA) [Kingella kingae strain NCTC10529]
MVTESERCAWIELALTPYIGAESFLRLIEHCGSAAEALRAPVNLVAQLAHHGKQAAAAWTDKSKAKSACEAALQWEQQEN
CRLLLLCDDDYPQLLTEGLTPPPLLFVRGQMACLQRPAIGIVGGRRATPQAVRMAGDFGKALSEKGIAVISGMATGIDAA
AHEGALQGSSSTIAVWGTGIDRIYPQSNQKLAYQIAERGAIISEFPLGTRPVAGNFPRRNRIIAALSWATLVVEATVESG
SLITARLAAEMGREVMAIPSSIDNMLAKGCHKLIKEGAKLVECVDDIVQECPLLLGESVQAALDLPTTLSTRKKREKTAK
PIAQISEVNEPETPSSLHENSDNVLLNAMGFSPIHPDLLAENLNLPAVDVYAELTELELDGWIVSMAGGRFQRVK

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=1141178 DQN52_RS02225 WP_032827817.1 404541..405728(-) (dprA) [Kingella kingae strain NCTC10529]
ATGGTTACAGAATCAGAACGCTGTGCATGGATAGAATTGGCTCTAACCCCTTATATTGGCGCGGAAAGTTTTTTGCGCCT
GATTGAGCATTGCGGTTCGGCAGCCGAAGCCTTGCGTGCGCCAGTCAATTTGGTGGCGCAGTTGGCACATCATGGCAAAC
AAGCTGCCGCCGCGTGGACAGACAAAAGTAAGGCAAAAAGTGCGTGTGAAGCGGCTTTGCAATGGGAGCAACAGGAAAAT
TGTAGGCTGCTTTTGTTGTGCGATGACGATTATCCACAGCTCTTAACCGAAGGTTTAACGCCACCTCCATTGCTGTTTGT
GCGTGGACAAATGGCGTGTTTACAGCGCCCTGCAATCGGCATTGTTGGCGGCAGACGCGCCACGCCACAAGCGGTACGAA
TGGCTGGCGATTTTGGTAAAGCATTGAGTGAAAAAGGCATTGCGGTTATTTCGGGCATGGCAACAGGCATTGACGCGGCA
GCACACGAAGGCGCGTTGCAAGGATCGAGCAGCACGATTGCGGTGTGGGGAACGGGCATTGACCGAATTTATCCACAGAG
CAACCAAAAATTAGCATATCAAATTGCCGAACGTGGCGCGATTATTTCCGAATTTCCATTGGGAACGCGCCCTGTTGCAG
GCAATTTTCCGCGCCGAAATCGGATTATTGCGGCGTTGAGTTGGGCGACTTTGGTGGTGGAAGCGACGGTGGAAAGTGGC
TCGCTCATCACAGCGCGATTGGCGGCGGAAATGGGGCGCGAAGTCATGGCGATTCCCAGTTCTATTGACAATATGCTTGC
CAAAGGTTGCCATAAACTCATCAAAGAAGGCGCGAAATTAGTGGAATGCGTGGACGATATTGTGCAGGAATGTCCGCTGT
TGTTGGGCGAATCGGTGCAGGCTGCTTTGGATTTACCCACAACTTTATCCACAAGAAAGAAACGCGAAAAAACAGCGAAA
CCAATCGCCCAAATAAGCGAAGTAAACGAACCCGAAACGCCAAGCAGCCTGCACGAAAACAGCGATAATGTGTTGCTCAA
TGCGATGGGATTTTCGCCTATCCACCCTGATTTATTGGCAGAAAATTTAAATTTGCCTGCTGTGGACGTGTATGCCGAGC
TAACCGAGTTGGAATTGGACGGCTGGATTGTGTCTATGGCTGGCGGACGTTTTCAGCGTGTGAAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-282)

DprA winged helix domain (DprA_WH)

(339-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

57.895

100

0.585
  dprA Neisseria meningitidis MC58

57.895

100

0.585
  dprA Neisseria gonorrhoeae MS11

56.359

100

0.572
  dprA Neisseria gonorrhoeae strain FA1090

55.86

100

0.567
  dprA Vibrio campbellii strain DS40M4

36.896

99.494

0.367
  dprA Vibrio cholerae strain A1552

36.181

100

0.365

Multiple sequence alignment