Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQN21_RS03120 Genome accession   NZ_LS483409
Coordinates   564587..565249 (+) Length   220 a.a.
NCBI ID   WP_077496365.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559587..570249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS03095 (NCTC13773_00623) - 559703..561103 (+) 1401 WP_077496363.1 Cof-type HAD-IIB family hydrolase -
  DQN21_RS03100 (NCTC13773_00624) - 561103..561459 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  DQN21_RS03105 (NCTC13773_00625) cysK 561573..562502 (-) 930 WP_012961540.1 cysteine synthase A -
  DQN21_RS03110 (NCTC13773_00626) - 562606..563232 (-) 627 WP_074658787.1 YigZ family protein -
  DQN21_RS03115 (NCTC13773_00627) comFA/cflA 563289..564590 (+) 1302 WP_074658789.1 DEAD/DEAH box helicase Machinery gene
  DQN21_RS03120 (NCTC13773_00628) comFC/cflB 564587..565249 (+) 663 WP_077496365.1 ComF family protein Machinery gene
  DQN21_RS03125 (NCTC13773_00629) hpf 565325..565873 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25534.58 Da        Isoelectric Point: 9.3328

>NTDB_id=1140554 DQN21_RS03120 WP_077496365.1 564587..565249(+) (comFC/cflB) [Streptococcus gallolyticus strain NCTC13773]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVHCPNCCRNGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKELKQALKKYKNYTFVPVPISPKRLKERQFNQVTALLQAAKISYEDLLIKREISKQSD
KTRKGRLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYENGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1140554 DQN21_RS03120 WP_077496365.1 564587..565249(+) (comFC/cflB) [Streptococcus gallolyticus strain NCTC13773]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTCATCTTAATGAAGAAAGATGACAA
CGGCGTTTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTCATTGCCCTAACTGCTGCCGAAATGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCATGGGAAAAACAACATCATCACGTCTCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATCCTTTTAAGTCACGTTTTTTCAAAAGAACTCAAACA
AGCATTAAAAAAATATAAAAATTATACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCGCTTTTACAAGCAGCTAAAATCTCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGGGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATTGATGATATTTACACAACTGGCGCCACTTTAAAAGGAATATATCAACTTTTCTATGAAAATGGCGCAAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae TIGR4

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae Rx1

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae D39

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae R6

50.909

100

0.509
  comFC/cflB Streptococcus mitis SK321

50.455

100

0.505

Multiple sequence alignment