Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQN33_RS08485 | Genome accession | NZ_LS483408 |
| Coordinates | 1699476..1699967 (-) | Length | 163 a.a. |
| NCBI ID | WP_015911862.1 | Uniprot ID | B9DVK3 |
| Organism | Streptococcus uberis strain NCTC4674 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1694476..1704967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN33_RS08470 (NCTC4674_01794) | - | 1696891..1697835 (+) | 945 | WP_015911860.1 | magnesium transporter CorA family protein | - |
| DQN33_RS08475 (NCTC4674_01795) | - | 1698185..1698850 (+) | 666 | WP_037592713.1 | DUF1129 domain-containing protein | - |
| DQN33_RS08480 (NCTC4674_01796) | rpsR | 1699183..1699422 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| DQN33_RS08485 (NCTC4674_01797) | ssb | 1699476..1699967 (-) | 492 | WP_015911862.1 | single-stranded DNA-binding protein | Machinery gene |
| DQN33_RS08490 (NCTC4674_01798) | rpsF | 1699988..1700278 (-) | 291 | WP_015911863.1 | 30S ribosomal protein S6 | - |
| DQN33_RS08495 (NCTC4674_01799) | mutY | 1700501..1701658 (+) | 1158 | WP_041817674.1 | A/G-specific adenine glycosylase | - |
| DQN33_RS08500 (NCTC4674_01800) | trxA | 1701670..1701984 (-) | 315 | WP_015911865.1 | thioredoxin | - |
| DQN33_RS08505 (NCTC4674_01801) | - | 1702096..1704429 (-) | 2334 | WP_111673492.1 | endonuclease MutS2 | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18047.86 Da Isoelectric Point: 4.9371
>NTDB_id=1140523 DQN33_RS08485 WP_015911862.1 1699476..1699967(-) (ssb) [Streptococcus uberis strain NCTC4674]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGSSNSYGNTGFGNDASSNSYSAPSQQTPHFGREESPFGNANPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGSSNSYGNTGFGNDASSNSYSAPSQQTPHFGREESPFGNANPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1140523 DQN33_RS08485 WP_015911862.1 1699476..1699967(-) (ssb) [Streptococcus uberis strain NCTC4674]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTTGC
TACTTTTACACTTGCTGTTAATCGCACTTTTAAAAGCCAAAATGGTGAGCGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCGAAAAAAGGTGCTTTAATCGGTATTACAGGTCGCATTCAGACTCGT
AATTACGAAAATCAGCAAGGTCAACGGGTTTATGTAACTGAAGTGGTTGCGGAAAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCTTCGAACTCTTATGGTAATACTGGCTTTGGCAATGACGCTTCAAGCAATAGTTATTCTGCAC
CTTCTCAACAAACACCTCATTTTGGTCGTGAAGAAAGTCCATTTGGCAATGCCAATCCTATGGATATTTCAGATGACGAT
TTACCTTTCTAA
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTTGC
TACTTTTACACTTGCTGTTAATCGCACTTTTAAAAGCCAAAATGGTGAGCGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCGAAAAAAGGTGCTTTAATCGGTATTACAGGTCGCATTCAGACTCGT
AATTACGAAAATCAGCAAGGTCAACGGGTTTATGTAACTGAAGTGGTTGCGGAAAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCTTCGAACTCTTATGGTAATACTGGCTTTGGCAATGACGCTTCAAGCAATAGTTATTCTGCAC
CTTCTCAACAAACACCTCATTTTGGTCGTGAAGAAAGTCCATTTGGCAATGCCAATCCTATGGATATTTCAGATGACGAT
TTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.725 |
100 |
0.595 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.595 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
50.862 |
71.166 |
0.362 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
65.031 |
0.362 |
| ssb | Vibrio cholerae strain A1552 |
33.714 |
100 |
0.362 |