Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DQN23_RS09010 Genome accession   NZ_LS483403
Coordinates   1791218..1792468 (+) Length   416 a.a.
NCBI ID   WP_020917669.1    Uniprot ID   A0AB33APT2
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1786218..1797468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS08985 - 1788348..1789686 (+) 1339 Protein_1729 IS3 family transposase -
  DQN23_RS09005 (NCTC13774_01887) rlmH 1790524..1791003 (-) 480 WP_020917668.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQN23_RS09010 (NCTC13774_01888) htrA 1791218..1792468 (+) 1251 WP_020917669.1 S1C family serine protease Regulator
  DQN23_RS09015 (NCTC13774_01889) spo0J 1792536..1793318 (+) 783 WP_020917670.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 416 a.a.        Molecular weight: 43306.51 Da        Isoelectric Point: 4.7284

>NTDB_id=1140372 DQN23_RS09010 WP_020917669.1 1791218..1792468(+) (htrA) [Streptococcus lutetiensis strain NCTC13774]
MKKITFQKVNYKKILKPLSVILVGFIGGVAGTLLILNMAGISINNVSGSSTKTTTSKVSYSNTNDTTKAVEKVREAVVSV
INYQSNSSSNDLYMQMFGGNLDNNTNNGSDSDLSIASEGSGVIYKKDGNSAYVVTNNHVVDGASQIEIMLSDGTKVVGEL
VGTDTYSDIAVVKIASDKVTTVAEFANSDKITVGETAIAIGSPLGTDYANSVTQGIVSSLSRTVTMTNDDGETISTNAIQ
TDAAINPGNSGGALINIEGQVIGINSSKISSTSDSGSGNSVEGMGFAIPANDVVKIINQLEANGKVIRPALGITMANLSD
LSTTTISRLNIPTSVTSGIVVASVQSGMPAEGVLKKYDVITAIDDKDVSSITDLQSVLYGHSTGDSIKVTFYRGTDKKTE
TIKLTKTTQDLSSSNQ

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1140372 DQN23_RS09010 WP_020917669.1 1791218..1792468(+) (htrA) [Streptococcus lutetiensis strain NCTC13774]
GTGAAAAAAATAACATTTCAAAAAGTCAATTACAAAAAAATCCTTAAACCACTATCCGTTATTTTAGTTGGTTTCATCGG
AGGAGTTGCTGGGACCTTACTCATTTTGAATATGGCTGGCATCTCAATCAATAATGTTAGTGGTTCAAGTACAAAAACTA
CAACAAGTAAAGTAAGTTACTCAAATACTAATGATACGACAAAAGCTGTCGAAAAAGTGAGAGAAGCAGTCGTATCAGTC
ATCAATTATCAATCAAATAGCTCTTCAAATGATTTGTATATGCAAATGTTTGGTGGCAATTTAGACAATAACACTAATAA
TGGATCAGATAGTGATTTAAGTATCGCTAGTGAAGGTTCTGGGGTTATTTACAAAAAAGACGGCAATTCTGCTTATGTCG
TTACTAATAACCACGTTGTCGATGGTGCTAGTCAAATCGAAATCATGCTTTCTGACGGTACAAAAGTAGTCGGTGAATTA
GTCGGTACCGATACATACTCAGATATCGCCGTTGTCAAAATTGCTTCTGATAAAGTCACAACGGTAGCTGAATTTGCTAA
TTCAGATAAAATTACTGTTGGTGAAACAGCCATTGCTATTGGTAGCCCTCTAGGTACTGATTATGCTAACTCTGTGACAC
AAGGAATTGTCTCAAGTCTAAGCCGTACAGTTACAATGACTAACGACGATGGCGAAACAATTTCAACCAATGCTATCCAA
ACTGATGCCGCTATTAACCCAGGTAACTCTGGTGGTGCTTTGATTAACATTGAAGGACAAGTAATCGGTATTAATTCAAG
TAAAATCTCTTCTACCTCAGATTCTGGATCAGGTAATTCTGTAGAAGGTATGGGATTTGCTATTCCAGCTAATGATGTGG
TTAAAATTATTAATCAATTAGAAGCAAACGGAAAAGTTATTCGTCCAGCACTTGGTATCACAATGGCTAACCTAAGCGAT
TTATCAACAACAACAATCAGTCGCCTAAATATTCCAACTAGCGTCACATCTGGTATCGTCGTTGCTTCAGTTCAATCAGG
TATGCCTGCTGAAGGAGTACTTAAAAAATACGATGTAATCACAGCTATTGATGATAAAGATGTCTCTTCTATCACAGATC
TTCAAAGTGTTCTTTACGGTCATTCAACTGGAGATTCTATTAAAGTAACCTTCTATCGTGGTACTGACAAGAAAACAGAA
ACTATTAAACTAACGAAAACAACACAAGACCTCTCTTCATCAAATCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

64.838

96.394

0.625

  htrA Streptococcus gordonii str. Challis substr. CH1

60.741

97.356

0.591

  htrA Streptococcus mitis NCTC 12261

58.596

99.279

0.582

  htrA Streptococcus pneumoniae TIGR4

58.968

97.837

0.577

  htrA Streptococcus pneumoniae D39

58.968

97.837

0.577

  htrA Streptococcus pneumoniae Rx1

58.968

97.837

0.577

  htrA Streptococcus pneumoniae R6

58.968

97.837

0.577


Multiple sequence alignment