Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQM95_RS08535 Genome accession   NZ_LS483397
Coordinates   1663251..1663742 (-) Length   163 a.a.
NCBI ID   WP_037592710.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC3858     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1658251..1668742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS10010 (NCTC3858_01730) - 1658777..1659058 (-) 282 WP_128861521.1 DUF5960 family protein -
  DQM95_RS08510 (NCTC3858_01731) - 1659531..1659788 (+) 258 WP_046391581.1 hypothetical protein -
  DQM95_RS08515 (NCTC3858_01732) - 1659927..1660274 (+) 348 WP_037592718.1 hypothetical protein -
  DQM95_RS08520 (NCTC3858_01733) - 1660700..1661644 (+) 945 WP_037592716.1 magnesium transporter CorA family protein -
  DQM95_RS08525 (NCTC3858_01734) - 1661958..1662623 (+) 666 WP_037592713.1 DUF1129 domain-containing protein -
  DQM95_RS08530 (NCTC3858_01735) rpsR 1662958..1663197 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQM95_RS08535 (NCTC3858_01736) ssb 1663251..1663742 (-) 492 WP_037592710.1 single-stranded DNA-binding protein Machinery gene
  DQM95_RS08540 (NCTC3858_01737) rpsF 1663763..1664053 (-) 291 WP_015911863.1 30S ribosomal protein S6 -
  DQM95_RS08545 (NCTC3858_01738) mutY 1664276..1665433 (+) 1158 WP_037592709.1 A/G-specific adenine glycosylase -
  DQM95_RS08550 (NCTC3858_01739) trxA 1665445..1665759 (-) 315 WP_015911865.1 thioredoxin -
  DQM95_RS08555 (NCTC3858_01740) - 1665871..1668204 (-) 2334 WP_111686001.1 endonuclease MutS2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18077.89 Da        Isoelectric Point: 4.9371

>NTDB_id=1140181 DQM95_RS08535 WP_037592710.1 1663251..1663742(-) (ssb) [Streptococcus uberis strain NCTC3858]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGSSNSYSNTGFGNDASSNSYSAPSQQTPHFGREESPFGNANPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1140181 DQM95_RS08535 WP_037592710.1 1663251..1663742(-) (ssb) [Streptococcus uberis strain NCTC3858]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTTGC
TACTTTTACACTTGCTGTTAATCGCACTTTTAAAAGCCAAAATGGTGAGCGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCGAAAAAAGGTGCTTTAATCGGTATTACAGGTCGCATTCAGACTCGT
AATTACGAAAATCAGCAAGGTCAACGGGTTTATGTAACTGAAGTGGTTGCGGAAAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCTTCGAACTCTTATAGTAATACTGGCTTTGGCAATGATGCTTCAAGCAATAGTTATTCTGCAC
CTTCTCAACAAACACCTCATTTTGGTCGTGAAGAAAGTCCATTTGGCAATGCCAATCCTATGGATATTTCAGATGACGAT
TTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.595
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.595
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50.42

73.006

0.368
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

65.031

0.362
  ssb Vibrio cholerae strain A1552

33.714

100

0.362

Multiple sequence alignment