Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DQM95_RS05090 Genome accession   NZ_LS483397
Coordinates   955223..956068 (-) Length   281 a.a.
NCBI ID   WP_012658425.1    Uniprot ID   A0A6L6GA51
Organism   Streptococcus uberis strain NCTC3858     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 950223..961068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS05070 (NCTC3858_01037) - 950476..951189 (-) 714 WP_037592153.1 DUF3307 domain-containing protein -
  DQM95_RS05075 (NCTC3858_01038) - 951182..951856 (-) 675 WP_037592152.1 SatD family protein -
  DQM95_RS05080 (NCTC3858_01039) - 952068..952952 (+) 885 WP_037592151.1 LysR family transcriptional regulator -
  DQM95_RS05085 (NCTC3858_01040) topA 952986..955118 (-) 2133 WP_037592149.1 type I DNA topoisomerase -
  DQM95_RS05090 (NCTC3858_01041) dprA 955223..956068 (-) 846 WP_012658425.1 DNA-processing protein DprA Machinery gene
  DQM95_RS05095 (NCTC3858_01042) - 956126..956671 (-) 546 WP_037592147.1 sugar O-acetyltransferase -
  DQM95_RS05100 (NCTC3858_01043) - 956702..957475 (-) 774 WP_037592145.1 ribonuclease HII -
  DQM95_RS05105 (NCTC3858_01044) ylqF 957459..958313 (-) 855 WP_037592143.1 ribosome biogenesis GTPase YlqF -
  DQM95_RS05110 (NCTC3858_01045) - 958486..958923 (+) 438 WP_037592141.1 DUF1836 domain-containing protein -
  DQM95_RS05115 (NCTC3858_01046) - 958926..959576 (+) 651 WP_012658430.1 hemolysin III family protein -
  DQM95_RS05120 (NCTC3858_01047) - 959660..960562 (+) 903 WP_037592139.1 diacylglycerol kinase family protein -
  DQM95_RS05125 (NCTC3858_01048) - 960609..960956 (-) 348 WP_037592137.1 hypothetical protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31337.29 Da        Isoelectric Point: 9.3793

>NTDB_id=1140167 DQM95_RS05090 WP_012658425.1 955223..956068(-) (dprA) [Streptococcus uberis strain NCTC3858]
MNNFDIFKLKCAGLKNHHILNIIAYMKHSTQSLSLSLRNMAVVSKCSDPITFIENYKALKSKELRKIFMEYPSISILDKE
YPALLKEIHNPPVLFFYQGNIKLLDSPKLAIVGSRKASETGIKSVQKIVEELNNKYVIVSGLARGIDTAAHLSSLRNGGQ
TIAIIGSGFNNIYPKENRRLQDYIGQHHLLISEYAPNDKPYSFHFPERNRIIAGLVKAVLVVEAKKRSGSLITCQHALDE
GRDVYAIPGNIIDGFSDGCNLLIQEGAKCVTNGFQISSELF

Nucleotide


Download         Length: 846 bp        

>NTDB_id=1140167 DQM95_RS05090 WP_012658425.1 955223..956068(-) (dprA) [Streptococcus uberis strain NCTC3858]
ATGAATAATTTTGACATTTTTAAACTTAAGTGTGCCGGACTAAAAAATCATCACATTCTGAATATCATCGCCTACATGAA
ACACTCTACACAATCACTTTCTTTATCTTTACGAAATATGGCTGTTGTATCCAAATGTAGTGATCCCATTACATTCATAG
AGAACTATAAAGCATTAAAAAGTAAGGAACTTAGAAAAATTTTCATGGAATATCCTTCCATTTCTATTCTAGATAAGGAA
TACCCAGCTCTATTAAAAGAAATTCATAATCCACCAGTTTTATTCTTCTACCAAGGAAATATCAAACTACTAGATTCACC
TAAACTAGCTATTGTTGGGTCTAGAAAGGCTTCCGAAACAGGAATAAAAAGTGTCCAAAAAATTGTTGAAGAATTAAATA
ATAAATATGTTATTGTCAGTGGACTTGCTAGAGGCATCGACACAGCCGCTCACCTCAGTAGTTTAAGAAATGGTGGTCAA
ACAATTGCAATTATTGGCTCTGGTTTTAATAACATATATCCTAAAGAAAATCGCCGCTTACAAGATTATATTGGTCAACA
TCATCTCCTTATATCAGAATATGCCCCTAATGATAAGCCATATTCCTTTCACTTTCCTGAACGAAATCGTATTATTGCAG
GTCTCGTAAAAGCAGTATTAGTAGTTGAAGCAAAAAAACGCTCTGGAAGTTTGATAACCTGTCAACATGCATTGGATGAA
GGACGTGACGTTTATGCTATTCCAGGAAATATTATCGATGGATTTTCTGATGGTTGTAATTTATTGATTCAAGAAGGCGC
AAAGTGCGTGACCAATGGCTTTCAAATCAGTTCTGAACTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-271)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L6GA51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

62.857

99.644

0.626
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

55

99.644

0.548
  dprA/cilB/dalA Streptococcus pneumoniae D39

55

99.644

0.548
  dprA/cilB/dalA Streptococcus pneumoniae R6

55

99.644

0.548
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

55

99.644

0.548
  dprA/cilB/dalA Streptococcus mitis SK321

55

99.644

0.548
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

54.643

99.644

0.544
  dprA Lactococcus lactis subsp. cremoris KW2

54.48

99.288

0.541
  dprA Vibrio campbellii strain DS40M4

36.177

100

0.377

Multiple sequence alignment