Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DQM81_RS00665 Genome accession   NZ_LS483389
Coordinates   102216..103250 (+) Length   344 a.a.
NCBI ID   WP_227868709.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10879     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97216..108250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM81_RS00655 (NCTC10879_00132) - 100884..101249 (+) 366 WP_038433847.1 DUF1033 family protein -
  DQM81_RS00660 (NCTC10879_00133) comYA 101342..102280 (+) 939 WP_111688216.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM81_RS00665 (NCTC10879_00134) comYB 102216..103250 (+) 1035 WP_227868709.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM81_RS00670 (NCTC10879_00135) comYC 103252..103578 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM81_RS00675 (NCTC10879_00136) comGD 103553..103981 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  DQM81_RS00680 (NCTC10879_00137) comGE 103938..104222 (+) 285 WP_011284422.1 competence type IV pilus minor pilin ComGE -
  DQM81_RS00685 (NCTC10879_00138) comYF 104215..104649 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM81_RS00690 (NCTC10879_00139) comGG 104633..104959 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  DQM81_RS00695 (NCTC10879_00140) comYH 105057..106010 (+) 954 WP_038433850.1 class I SAM-dependent methyltransferase Machinery gene
  DQM81_RS00700 (NCTC10879_00141) - 106069..107265 (+) 1197 WP_010921803.1 acetate kinase -
  DQM81_RS00705 - 107452..107760 (+) 309 Protein_90 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39704.20 Da        Isoelectric Point: 9.7085

>NTDB_id=1139829 DQM81_RS00665 WP_227868709.1 102216..103250(+) (comYB) [Streptococcus pyogenes strain NCTC10879]
MISFLRQDISIPSKLSLKKLSSKHQHKFIQLLANLLSTGFSFVEVIAFLKRSQLLQLDYVLKMEESLLKGQGLADMLSGL
GFSDAILTQISLADRHGNIETTLVAIQHYLNQMARIRRKTVEVITYPLILLLFLFVMMLGLRRYLVPQLETQNQITYFLN
HFPAFFIGFCSGLILLFGMVWLRWRSQSRLKLYSRLSRYPFLGKLLKQYLTSYYAREWGTLIGQGLDLMTILDIMAIEKS
SLMKELAEDIRMSLLEGQAFHIKVATYPFFKKELSLMIEYGEIKSKLGAELEIYAQESWEQFFSQLYQVTQLIQPAIFLV
VAVTIVMIYAAILLPIYQNMGGIF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1139829 DQM81_RS00665 WP_227868709.1 102216..103250(+) (comYB) [Streptococcus pyogenes strain NCTC10879]
TTGATCAGCTTTTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAGTAAACATCAGCATAA
ATTCATTCAATTACTAGCTAATCTTTTATCTACAGGATTTAGCTTCGTAGAGGTTATTGCTTTTTTAAAAAGAAGCCAGT
TGCTTCAGCTAGATTATGTTCTTAAAATGGAAGAGTCTTTATTAAAAGGACAAGGCTTAGCAGATATGTTGTCGGGTTTA
GGTTTTTCAGATGCTATTCTTACTCAAATTAGTTTAGCTGATAGACACGGTAATATTGAAACAACATTAGTAGCGATTCA
ACATTACTTGAACCAAATGGCAAGGATCAGACGAAAAACTGTTGAAGTTATCACCTATCCTCTTATTCTTTTACTTTTTC
TTTTTGTGATGATGCTAGGGTTGAGACGCTATTTAGTCCCTCAATTAGAAACTCAAAATCAGATAACTTACTTTCTTAAC
CATTTTCCTGCCTTCTTTATAGGTTTTTGCTCAGGTCTTATTTTGTTGTTCGGGATGGTATGGCTACGATGGCGATCTCA
AAGCCGCTTGAAACTCTATAGTCGGCTAAGCCGTTATCCTTTTTTAGGTAAACTGTTAAAACAATACTTAACTAGTTATT
ATGCTAGAGAATGGGGTACGTTAATAGGTCAAGGTCTTGATTTGATGACTATTTTAGACATTATGGCCATTGAGAAATCC
TCACTAATGAAAGAATTAGCTGAGGACATCAGAATGAGTCTGCTTGAAGGGCAAGCCTTTCACATTAAAGTAGCTACCTA
CCCTTTTTTTAAAAAAGAATTAAGTTTAATGATTGAATACGGTGAAATCAAATCGAAACTGGGGGCTGAGTTGGAAATCT
ATGCCCAGGAAAGCTGGGAACAATTTTTTAGTCAGCTTTATCAAGTGACACAACTTATTCAACCAGCTATTTTTTTAGTA
GTTGCTGTGACAATCGTCATGATTTATGCGGCAATCCTATTACCAATTTACCAAAATATGGGAGGTATTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

53.982

98.547

0.532
  comYB Streptococcus mutans UA159

53.982

98.547

0.532
  comYB Streptococcus gordonii str. Challis substr. CH1

50.294

98.837

0.497
  comGB/cglB Streptococcus mitis NCTC 12261

47.917

97.674

0.468
  comGB/cglB Streptococcus mitis SK321

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae Rx1

45.946

96.802

0.445
  comGB/cglB Streptococcus pneumoniae D39

45.946

96.802

0.445
  comGB/cglB Streptococcus pneumoniae R6

45.946

96.802

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

45.946

96.802

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

42.769

94.477

0.404

Multiple sequence alignment