Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM63_RS01010 Genome accession   NZ_LS483385
Coordinates   185381..187354 (-) Length   657 a.a.
NCBI ID   WP_002914124.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC7863     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 180381..192354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS00995 (NCTC7863_00193) - 180604..181626 (-) 1023 WP_002902119.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DQM63_RS01000 (NCTC7863_00194) - 181786..183492 (+) 1707 WP_032910568.1 ABC transporter ATP-binding protein -
  DQM63_RS11765 - 183494..183632 (+) 139 Protein_172 ABC transporter ATP-binding protein -
  DQM63_RS11770 - 183608..184339 (+) 732 Protein_173 ABC transporter ATP-binding protein -
  DQM63_RS11775 rcrQ 184475..185263 (+) 789 WP_373276230.1 ABC transporter ATP-binding protein Regulator
  DQM63_RS01010 (NCTC7863_00196) amiA 185381..187354 (-) 1974 WP_002914124.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS01015 (NCTC7863_00197) - 187583..188272 (+) 690 WP_002893948.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQM63_RS01025 (NCTC7863_00198) - 188538..188987 (+) 450 WP_002914123.1 8-oxo-dGTP diphosphatase -
  DQM63_RS01035 (NCTC7863_00199) - 189072..189515 (+) 444 WP_002899178.1 dUTP diphosphatase -
  DQM63_RS01040 (NCTC7863_00200) - 189517..190032 (+) 516 WP_002914120.1 histidine phosphatase family protein -
  DQM63_RS01045 (NCTC7863_00201) - 190086..190718 (+) 633 WP_002902135.1 methyltransferase domain-containing protein -
  DQM63_RS01050 (NCTC7863_00202) radA 190724..192091 (+) 1368 WP_080555468.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72231.17 Da        Isoelectric Point: 4.6944

>NTDB_id=1139606 DQM63_RS01010 WP_002914124.1 185381..187354(-) (amiA) [Streptococcus sanguinis strain NCTC7863]
MRKSNILLAAGLTLLSVGLLTACSGGGSSQSSKKIYSYVFTSDPTTLDYIQSAKGSTHELTTNGVDGLLENDKYGNLAPS
IAEDWTVSPDGLVYTYKLRKDAKWYTADGEEYADVTAQDFVAGIKHAADIKSDALPLIQDSIKGLSEYAAGTNKDFSAVG
VKALDDHTVQYTLNKPETYWNSKTTSGVMMPVNEAFLEKQGKEFGQATKADSILYNGPFIMKSITSKSSVEFEKNPNYWD
KDKVKIDGVKLSYYDGSDQDSLARTFGDGGYSLARLYPATSSYSSIAEKYKDNIFMTEAGAGVGLISFNIDRQSYNHTSK
TSDEQKEATKKALLNKDFRQALAFALNRESYSAQVNGEDAAKPAVRNLFVPPTFVQANGKEFGTLVEESLASYGDEWKGI
KLDDGQDGLHNADKAKAEFAKAKQALANEGVQFPIHLDVPVAQNSTNFVNRMQSLKQSLEEALGKDNVSVDLQMLAEDEA
LNITFNAEAASQEDWDINGLVAWDPDYQDPSTYLDILVPGNSTQTRTYLGFEGKDNAAAKAVGLDEYSKLIEEAGNETQD
VDKRYEKYAAAQAWLTDSALVVPTMSSRGAAPFISRIVPFTNSYAQTGTKDANYHKYVEISDEIVTTKDYQKAQEKWKKE
KEESNKKAQEDLTKHVK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=1139606 DQM63_RS01010 WP_002914124.1 185381..187354(-) (amiA) [Streptococcus sanguinis strain NCTC7863]
ATGAGAAAATCAAATATTCTTCTTGCCGCAGGGCTCACTCTGCTCTCTGTCGGCTTACTTACAGCTTGCTCTGGAGGCGG
AAGTTCCCAATCCAGCAAAAAAATCTACAGCTATGTCTTTACGTCTGATCCAACGACTTTGGACTACATCCAGTCGGCAA
AGGGGTCTACCCACGAGCTGACTACAAATGGTGTAGATGGCTTGCTGGAAAATGATAAATATGGAAACTTAGCTCCGTCT
ATCGCAGAAGATTGGACAGTCTCTCCAGATGGTCTCGTCTATACCTATAAGCTGCGCAAAGATGCCAAGTGGTATACCGC
TGATGGCGAAGAATACGCAGATGTCACGGCTCAGGACTTTGTGGCAGGTATCAAACATGCTGCTGATATCAAATCAGACG
CTCTCCCTCTTATCCAAGATTCTATCAAGGGGCTGAGTGAATATGCAGCTGGTACCAACAAGGACTTTTCAGCTGTTGGA
GTTAAGGCACTGGACGATCATACGGTCCAATATACACTCAACAAGCCTGAAACCTACTGGAACTCTAAAACAACATCAGG
TGTTATGATGCCGGTCAACGAGGCCTTCCTAGAAAAGCAAGGCAAGGAATTCGGTCAGGCAACCAAAGCCGACTCCATTC
TGTATAACGGTCCATTTATCATGAAATCCATTACTTCTAAATCCTCTGTCGAATTTGAGAAGAACCCTAACTACTGGGAT
AAGGACAAGGTCAAGATTGATGGTGTCAAACTGTCTTACTACGATGGTTCTGACCAAGATTCACTAGCGCGGACCTTTGG
GGATGGCGGCTACAGTTTGGCAAGACTCTACCCAGCCACTTCCAGTTATTCCTCAATCGCTGAGAAATACAAAGATAATA
TCTTCATGACAGAAGCAGGAGCGGGGGTCGGTCTAATCAGCTTTAACATTGACCGTCAAAGTTATAACCACACTTCTAAA
ACCAGCGATGAACAAAAAGAAGCTACCAAAAAAGCTCTGCTAAACAAGGACTTCCGCCAAGCTCTAGCCTTTGCCCTTAA
CCGCGAAAGCTATTCAGCTCAGGTCAACGGAGAAGATGCAGCCAAGCCAGCTGTCCGTAATCTCTTTGTTCCGCCAACTT
TCGTACAAGCCAATGGTAAGGAATTTGGCACTCTGGTCGAAGAATCACTGGCTTCCTATGGTGACGAGTGGAAAGGTATC
AAGCTGGATGACGGCCAAGACGGTCTCCACAATGCTGACAAAGCCAAAGCGGAATTTGCCAAAGCCAAGCAGGCTCTTGC
AAATGAAGGCGTACAATTCCCAATTCACCTAGATGTTCCTGTCGCTCAGAATTCTACTAACTTCGTCAACCGTATGCAAT
CTCTGAAACAATCATTAGAAGAGGCGTTAGGAAAGGACAATGTCTCTGTAGACCTACAGATGCTGGCTGAGGACGAAGCA
CTAAACATCACCTTCAATGCTGAAGCTGCTAGCCAGGAAGACTGGGATATCAACGGTCTCGTTGCCTGGGATCCAGACTA
CCAAGATCCATCTACTTACCTGGACATTTTAGTGCCAGGTAACAGCACTCAGACCAGAACCTACCTTGGATTTGAAGGCA
AAGACAATGCTGCTGCTAAAGCTGTAGGACTAGATGAGTATAGTAAACTGATCGAAGAAGCCGGAAACGAAACACAAGAT
GTTGACAAGCGTTATGAAAAATATGCTGCAGCTCAAGCATGGCTGACAGATAGTGCCCTCGTTGTGCCAACTATGAGCAG
CAGAGGAGCAGCACCGTTCATTTCTCGGATTGTGCCATTTACCAACTCTTATGCTCAGACAGGTACAAAAGATGCCAACT
ACCATAAATACGTGGAAATCAGTGATGAGATTGTCACGACTAAAGACTATCAGAAGGCCCAAGAAAAGTGGAAAAAAGAA
AAAGAGGAATCCAATAAAAAGGCCCAAGAGGATCTGACTAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

59.119

100

0.592
  amiA3 Streptococcus thermophilus LMD-9

57.967

100

0.581
  amiA3 Streptococcus thermophilus LMG 18311

57.663

100

0.578

Multiple sequence alignment