Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM63_RS01050 Genome accession   NZ_LS483385
Coordinates   190724..192091 (+) Length   455 a.a.
NCBI ID   WP_080555468.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC7863     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 185724..197091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS01015 (NCTC7863_00197) - 187583..188272 (+) 690 WP_002893948.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQM63_RS01025 (NCTC7863_00198) - 188538..188987 (+) 450 WP_002914123.1 8-oxo-dGTP diphosphatase -
  DQM63_RS01035 (NCTC7863_00199) - 189072..189515 (+) 444 WP_002899178.1 dUTP diphosphatase -
  DQM63_RS01040 (NCTC7863_00200) - 189517..190032 (+) 516 WP_002914120.1 histidine phosphatase family protein -
  DQM63_RS01045 (NCTC7863_00201) - 190086..190718 (+) 633 WP_002902135.1 methyltransferase domain-containing protein -
  DQM63_RS01050 (NCTC7863_00202) radA 190724..192091 (+) 1368 WP_080555468.1 DNA repair protein RadA Machinery gene
  DQM63_RS01055 (NCTC7863_00203) - 192208..192924 (+) 717 WP_002902140.1 TIGR00266 family protein -
  DQM63_RS01060 (NCTC7863_00204) - 193038..193733 (+) 696 WP_002902143.1 TIGR00266 family protein -
  DQM63_RS01065 (NCTC7863_00205) - 193881..194378 (+) 498 WP_002902145.1 carbonic anhydrase -
  DQM63_RS01070 (NCTC7863_00206) - 194476..195342 (+) 867 WP_002902146.1 ABC transporter permease -
  DQM63_RS01075 (NCTC7863_00207) - 195339..196097 (+) 759 WP_002902147.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49758.14 Da        Isoelectric Point: 5.7873

>NTDB_id=1139607 DQM63_RS01050 WP_080555468.1 190724..192091(+) (radA) [Streptococcus sanguinis strain NCTC7863]
MTIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGIVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNALNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1139607 DQM63_RS01050 WP_080555468.1 190724..192091(+) (radA) [Streptococcus sanguinis strain NCTC7863]
ATCACCATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTATCTAGGCCGTTGTCC
TAACTGCGGCTCTTGGTCTTCTTTCGTTGAGGAAGTAGAGGCTGCAGAGGTCAAGCATGCCCGTGTTTCCTTGACAGGCG
AAAAGACCCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAATCGGACCAAGACGGAAATGGACGAGTTCAAC
CGTGTGCTGGGTGGTGGCGTAGTGCCTGGTAGTCTGGTTCTGATTGGCGGGGATCCCGGTATCGGGAAATCCACCCTGCT
TCTGCAGGTATCCACCCAGCTTTCCCACCAGGGCATCGTCCTATATGTCAGTGGGGAGGAATCAGCTGAGCAGATTAAGT
TGCGGGCGGAGCGTCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGCACGGAG
ATTGAGAAAATCAAGCCAGATTTTCTGATTATCGACTCTATACAGACGGTGATGTCGCCGGAAATTTCCAGTGTTCAAGG
CTCTGTTTCTCAAGTTCGAGAGGTGACAGCTGAGCTCATGCAGCTGGCCAAGACCAATAATATTGCGACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTAGCTGGTCCTCGAACTTTGGAGCACATGGTGGACACCGTGCTTTATTTTGAGGGT
GAACGTCAGCATACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGCTCGACCAATGAGATTGGTATTTTTGAGAT
GCAATCTGGCGGGCTAGTTGAGGTTGTCAATCCCAGTGAAGTCTTTCTGGAAGAGCGTCTGGACGGCGCGACAGGCTCGT
CTATTGTCGTGACCATGGAAGGAACGCGGCCGATTTTGGCTGAGGTGCAGGCTTTGGTGACACCGACCATGTTCGGCAAT
GCCAAACGAACCACGACTGGACTGGACTTTAACCGAGCCAGCCTCATCATGGCTGTTCTGGAAAAGAGGGCGGGACTCCT
CTTGCAAAATCAAGATGCCTACCTCAAGTCTGCTGGCGGCGTCAAGCTAGATGAGCCAGCCATTGATTTGGCAGTAGCGG
TAGCCATTGCTTCCAGCTACAAGGATTTACCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGCGAA
ATCCGACGGGTCAACCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGCTGGGTTTCACCAAAGTCTACGCTCCTAAAAA
CGCTCTGAACGGCCTCAAAGTTCCAGACAATATCCAAGTCATTGGTGTGACGACGATTGGGGAAGTGTTAAAGAAAGTAT
TTTCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.17

99.56

0.908
  radA Streptococcus pneumoniae D39

90.949

99.56

0.905
  radA Streptococcus pneumoniae R6

90.949

99.56

0.905
  radA Streptococcus pneumoniae Rx1

90.949

99.56

0.905
  radA Streptococcus mitis SK321

90.949

99.56

0.905
  radA Streptococcus pneumoniae TIGR4

90.949

99.56

0.905
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment