Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQM67_RS07530 Genome accession   NZ_LS483383
Coordinates   1496283..1496948 (-) Length   221 a.a.
NCBI ID   WP_005591894.1    Uniprot ID   A0A3R9SLM7
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491283..1501948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS07515 (NCTC12479_01459) - 1491683..1492354 (-) 672 WP_005591897.1 hypothetical protein -
  DQM67_RS07520 (NCTC12479_01460) - 1492396..1495509 (-) 3114 WP_005591896.1 DEAD/DEAH box helicase -
  DQM67_RS07525 (NCTC12479_01461) hpf 1495659..1496201 (-) 543 WP_005591895.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQM67_RS07530 (NCTC12479_01462) comFC/cflB 1496283..1496948 (-) 666 WP_005591894.1 ComF family protein Machinery gene
  DQM67_RS07535 (NCTC12479_01463) comFA/cflA 1496945..1498246 (-) 1302 WP_005591893.1 DEAD/DEAH box helicase Machinery gene
  DQM67_RS07540 (NCTC12479_01464) - 1498303..1498938 (+) 636 WP_005591892.1 YigZ family protein -
  DQM67_RS07545 (NCTC12479_01465) cysK 1499055..1499984 (+) 930 WP_005591891.1 cysteine synthase A -
  DQM67_RS07550 (NCTC12479_01466) - 1500032..1500394 (-) 363 WP_005591890.1 S1 RNA-binding domain-containing protein -
  DQM67_RS07555 (NCTC12479_01467) - 1500394..1501794 (-) 1401 WP_037586248.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25525.61 Da        Isoelectric Point: 8.3207

>NTDB_id=1139515 DQM67_RS07530 WP_005591894.1 1496283..1496948(-) (comFC/cflB) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MRNCLLCSQAVEENRTFSSLILLQKEQNTICKHCRAGFEAISSIHCPRCWKDGEAKVCSDCQIWETQGYLVQHQACFLYN
DLMKDFFSKYKFQGDYLLRFVFAEVLKKSLRNFKEYTLVPIPVSPEKYQSRGFNQVEGFLQAAGLPYKQLLEKQDALAQS
SKNRQERLKSQQCFTLVKDVLLPEKILLIDDVYTTGKTLQLARELLLEAGVKEVLTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1139515 DQM67_RS07530 WP_005591894.1 1496283..1496948(-) (comFC/cflB) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAGAAATTGCTTGTTATGCAGCCAGGCAGTAGAAGAAAATAGGACTTTTTCTTCCTTGATTTTATTACAAAAAGAGCA
AAATACAATTTGTAAACATTGTCGAGCAGGATTTGAAGCGATTTCCTCTATCCATTGCCCACGTTGCTGGAAGGATGGGG
AAGCGAAAGTCTGCTCGGATTGTCAAATATGGGAAACGCAAGGCTATTTGGTGCAGCATCAGGCTTGCTTTCTTTATAAT
GATTTGATGAAGGATTTCTTCAGCAAATACAAGTTTCAAGGAGATTATCTTCTGAGATTTGTTTTTGCGGAAGTTCTCAA
AAAAAGTCTCAGAAACTTCAAAGAATATACTCTGGTTCCTATTCCAGTCAGCCCTGAAAAATACCAAAGTCGAGGTTTTA
ATCAGGTGGAAGGCTTCTTGCAAGCGGCTGGTTTGCCTTATAAACAGTTGCTGGAAAAGCAGGATGCGCTTGCCCAATCC
AGTAAAAATCGCCAAGAACGTTTAAAAAGCCAGCAATGTTTTACATTGGTAAAAGATGTCCTTCTGCCAGAAAAAATTCT
TCTGATAGATGATGTATATACGACTGGAAAAACCTTGCAATTAGCTCGAGAATTATTGCTGGAAGCAGGTGTGAAAGAAG
TTTTGACATTTTCACTCGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9SLM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

51.835

98.643

0.511
  comFC/cflB Streptococcus pneumoniae D39

51.835

98.643

0.511
  comFC/cflB Streptococcus pneumoniae R6

51.835

98.643

0.511
  comFC/cflB Streptococcus pneumoniae TIGR4

51.835

98.643

0.511
  comFC/cflB Streptococcus mitis SK321

51.376

98.643

0.507
  comFC/cflB Streptococcus mitis NCTC 12261

51.376

98.643

0.507

Multiple sequence alignment