Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DQM67_RS03090 Genome accession   NZ_LS483383
Coordinates   606455..607414 (+) Length   319 a.a.
NCBI ID   WP_005590755.1    Uniprot ID   A0AAV3EDZ6
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 601455..612414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS03075 (NCTC12479_00587) - 602740..603447 (+) 708 WP_005590758.1 glucosamine-6-phosphate deaminase -
  DQM67_RS03080 (NCTC12479_00588) - 603554..604897 (+) 1344 WP_005590757.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DQM67_RS03085 (NCTC12479_00589) - 605130..606296 (+) 1167 WP_037586343.1 MFS transporter -
  DQM67_RS03090 (NCTC12479_00590) coiA 606455..607414 (+) 960 WP_005590755.1 competence protein CoiA Machinery gene
  DQM67_RS03095 (NCTC12479_00591) pepF 607435..609237 (+) 1803 WP_005592387.1 oligoendopeptidase F Regulator
  DQM67_RS03100 (NCTC12479_00592) - 609239..609922 (+) 684 WP_005590753.1 O-methyltransferase -
  DQM67_RS03105 (NCTC12479_00593) prsA 610033..611109 (+) 1077 WP_005592327.1 peptidylprolyl isomerase PrsA -
  DQM67_RS03110 (NCTC12479_00595) - 611344..611826 (+) 483 WP_005592412.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37784.63 Da        Isoelectric Point: 9.3823

>NTDB_id=1139496 DQM67_RS03090 WP_005590755.1 606455..607414(+) (coiA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MLLAKNKEGILLNAMENQPSLGEQTFCPACSGAVRFKKGRVMRPHFAHISLENCSFYTENESAEHLNLKAGLYSWGKQSQ
EIQVEAFLPEIRQIADLLVDGRIALEVQCSPLSQERLEERTLSYRQHGYQVLWLLGKKLWLKQSLTKLQKDFLYFSQNMG
FHLWELDEKKQELRLKYLIHEDLHGRAQYKVKSFPFGQCCLLSVLRKPFQKQGIESYLARQDPEICRYVRQQLYYQQPRW
MKLQAQLYQKGDNLLTKSVEDFYPQVRPVQASSFCQITRDLTSYYQHFHRYYQAEKNKQLQIIYPPVFYARISPTFMIK

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1139496 DQM67_RS03090 WP_005590755.1 606455..607414(+) (coiA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGTTGCTTGCGAAAAATAAAGAGGGGATTTTGCTGAATGCGATGGAAAATCAGCCGTCTCTAGGCGAACAAACCTTTTG
TCCGGCCTGTTCGGGAGCGGTCCGCTTCAAAAAAGGAAGGGTCATGCGACCGCATTTTGCTCATATTTCTCTTGAAAATT
GTTCGTTTTATACGGAAAATGAAAGTGCGGAGCATTTGAACTTGAAAGCTGGCCTTTATAGCTGGGGAAAGCAAAGCCAA
GAGATTCAGGTGGAGGCCTTTTTACCTGAGATAAGGCAGATTGCCGACCTTTTGGTAGATGGTCGCATAGCTCTGGAGGT
TCAATGCAGTCCTCTTAGTCAGGAACGACTTGAGGAAAGGACGCTGTCCTATCGGCAGCATGGCTATCAAGTTCTCTGGC
TCTTAGGCAAGAAATTATGGTTAAAACAGTCACTGACGAAACTGCAAAAGGACTTTCTTTATTTTAGTCAAAATATGGGC
TTTCATCTTTGGGAATTGGATGAGAAAAAGCAGGAGCTTCGGCTTAAATATCTCATTCACGAGGACTTGCATGGGCGAGC
TCAGTACAAGGTCAAATCCTTTCCTTTTGGTCAATGCTGCCTTTTATCCGTCTTGCGCAAGCCTTTTCAGAAGCAGGGGA
TAGAAAGTTATCTGGCGCGGCAGGATCCAGAGATTTGTCGCTATGTTCGTCAGCAGCTTTATTACCAGCAGCCTCGCTGG
ATGAAGCTCCAAGCCCAGCTCTATCAGAAAGGAGACAATCTTCTGACCAAGTCAGTAGAGGATTTTTATCCGCAGGTTCG
GCCTGTTCAAGCCAGCTCCTTTTGCCAAATAACAAGAGACTTGACGTCCTATTACCAGCACTTTCATCGCTATTATCAGG
CTGAAAAAAATAAGCAGCTTCAAATTATCTATCCACCAGTATTTTATGCGAGGATTTCCCCCACTTTTATGATAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(4-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

54.839

97.179

0.533
  coiA Streptococcus pneumoniae Rx1

53.871

97.179

0.524
  coiA Streptococcus pneumoniae D39

53.871

97.179

0.524
  coiA Streptococcus pneumoniae R6

53.871

97.179

0.524
  coiA Streptococcus pneumoniae TIGR4

53.548

97.179

0.52
  coiA Lactococcus lactis subsp. cremoris KW2

41.796

100

0.423

Multiple sequence alignment