Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM67_RS03095 Genome accession   NZ_LS483383
Coordinates   607435..609237 (+) Length   600 a.a.
NCBI ID   WP_005592387.1    Uniprot ID   A0AAV3EEA8
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 602435..614237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS03075 (NCTC12479_00587) - 602740..603447 (+) 708 WP_005590758.1 glucosamine-6-phosphate deaminase -
  DQM67_RS03080 (NCTC12479_00588) - 603554..604897 (+) 1344 WP_005590757.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DQM67_RS03085 (NCTC12479_00589) - 605130..606296 (+) 1167 WP_037586343.1 MFS transporter -
  DQM67_RS03090 (NCTC12479_00590) coiA 606455..607414 (+) 960 WP_005590755.1 competence protein CoiA Machinery gene
  DQM67_RS03095 (NCTC12479_00591) pepF 607435..609237 (+) 1803 WP_005592387.1 oligoendopeptidase F Regulator
  DQM67_RS03100 (NCTC12479_00592) - 609239..609922 (+) 684 WP_005590753.1 O-methyltransferase -
  DQM67_RS03105 (NCTC12479_00593) prsA 610033..611109 (+) 1077 WP_005592327.1 peptidylprolyl isomerase PrsA -
  DQM67_RS03110 (NCTC12479_00595) - 611344..611826 (+) 483 WP_005592412.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69160.22 Da        Isoelectric Point: 4.5521

>NTDB_id=1139497 DQM67_RS03095 WP_005592387.1 607435..609237(+) (pepF) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MAKQRNEIEEKYTWDLTTIFPTDEAFEAELAQVSEEVRKAAGLAGHLLDSADSLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTLYSEFGQSFAFYEPEFMAITEDQYQAFLAEQPALQLYQHYFDKLLKKKAHILTQREEELLAGA
GEIFGAAGETFAILDNADIVFPMVHDEDGNEVQLSHGNYITLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSADFIPESVYDSLVSAVNKHLPLLQRYIALRAKILGISDLKMYDMYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAIFNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYDYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1139497 DQM67_RS03095 WP_005592387.1 607435..609237(+) (pepF) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTGACAACCATTTTCCCAACAGATGAAGCCTTTGA
AGCGGAGTTGGCGCAGGTTTCAGAAGAAGTGAGGAAAGCAGCTGGTCTGGCTGGGCATTTGCTGGATTCGGCTGACAGTC
TTTTGACAACGACGGAAATCCAGTTGGACTTGATGCGCCGGATTGAAAAGCTTTATTCTTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTGGCTAAGTATCAAGAATATCAGGCTAAGGGGATGACTCTTTATAGCGAATTCGGTCAAAGCTTTGC
CTTCTATGAGCCCGAATTTATGGCGATTACAGAAGATCAGTACCAAGCTTTCTTGGCTGAGCAGCCAGCCTTGCAGCTGT
ATCAGCATTATTTTGACAAGCTTTTGAAAAAGAAAGCCCACATCCTGACCCAGCGCGAAGAGGAGCTGTTGGCTGGTGCT
GGTGAAATCTTTGGGGCAGCAGGCGAAACCTTTGCTATCTTGGATAATGCAGATATCGTCTTTCCGATGGTGCATGACGA
AGACGGAAATGAAGTTCAGCTTAGCCACGGTAACTATATCACCTTGGTTGAGTCTAAGAACCGAGAGGTCCGCAAAGAAG
CTTACGAGGCTCTCTACAGCGTCTACGAGCAGTATCAGCATACCTATGCTAAGACTTTGCAGACCAATGTCAAGGTTCAC
AATTACAATGCGAAAGTCCGCAAGTTTTCATCTGCCCGTGAAGCAGCCTTGTCAGCGGACTTTATTCCAGAAAGTGTCTA
TGATAGCCTAGTTTCAGCTGTTAATAAGCATTTGCCTCTTTTGCAGCGTTATATCGCTTTGCGAGCGAAGATTTTAGGCA
TTTCTGACTTGAAGATGTATGATATGTACACACCTTTGTCAGAGACAGACTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTTTTGGCTATTCTGGGTGAGGATTATCTGAGCCGAGTGAAGACAGCATTTTCAGAGCGCTGGATTGA
TGTTCATGAAAATCAAGGCAAGCGCTCAGGAGCATACTCAGGTGGTTCTTATGATACCAATGCCTTTATGTTGCTTAATT
GGCAGGATACACTGGACAATCTCTTTACCTTGGTGCACGAGACAGGCCACAGTATGCACTCCAGCTACACCCGTGAGACC
CAACCTTATGTTTACGGAGACTATTCTATTTTCCTAGCTGAGATTGCTTCGACGACTAACGAAAACATCCTGACAGAAAA
GCTCTTGGAAGAAGTAGAAGATGATGCAACCCGCTTTGCTATCTTCAATCACTTCTTGGATGGCTTTAGAGGTACGGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAGCACGCTATCCACAAGGCTGACCAAGAAGGTCAAGTTTTGACCAGCGAGTTT
CTCAATGAGCTCTACGCTGACTTGAACGAGAAATACTATGGACTGAAAAAAGAGGATAATCCACAGATTCAGTATGAGTG
GGCACGGATTCCGCATTTCTACTATGATTACTATGTTTTCCAATACTCTACAGGATTTGCAGCCGCTTCTGCCTTGGCTG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAATATCTGGACTATCTCAAAGCTGGGAACTCTGACTATCCGCTC
AATGTCATCAAAAAAGCAGGTGTGGATATGGAAAAAGAAGACTATCTAAATGCAGCCTTTGCAGTCTTCGAACGCCGCTT
GGATGAATTTGAAGCCTTGGTAGAAAAGTTGGGACTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.792

99.333

0.683

Multiple sequence alignment