Detailed information NTG1139412

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: DQM69_RS08920
• Genome accession: NZ_LS483381
• Coordinates: 1835269..1835751 (-)
• Length: 160 a.a.
• NCBI ID: WP_002961571.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain NCTC10921
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1830269..1840751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM69_RS08890 (NCTC10921_01769)	rpoZ	1831713..1832030 (-)	318	WP_002961559.1	DNA-directed RNA polymerase subunit omega	-
DQM69_RS08895 (NCTC10921_01770)	gmk	1832053..1832667 (-)	615	WP_019769584.1	guanylate kinase	-
DQM69_RS08900 (NCTC10921_01771)	-	1832880..1833824 (+)	945	WP_002961563.1	magnesium transporter CorA family protein	-
DQM69_RS08905 (NCTC10921_01772)	-	1833854..1834543 (+)	690	WP_019775873.1	DUF1129 domain-containing protein	-
DQM69_RS08915 (NCTC10921_01773)	rpsR	1834972..1835211 (-)	240	WP_002961569.1	30S ribosomal protein S18	-
DQM69_RS08920 (NCTC10921_01774)	ssb	1835269..1835751 (-)	483	WP_002961571.1	single-stranded DNA-binding protein	Machinery gene
DQM69_RS08925 (NCTC10921_01775)	rpsF	1835763..1836053 (-)	291	WP_002961573.1	30S ribosomal protein S6	-
DQM69_RS08930 (NCTC10921_01776)	-	1836507..1837177 (-)	671	Protein_1689	TMEM175 family protein	-
DQM69_RS10480 (NCTC10921_01778)	-	1837340..1837516 (-)	177	WP_019777830.1	hypothetical protein	-
DQM69_RS08935 (NCTC10921_01779)	-	1837976..1838152 (-)	177	WP_019769837.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
DQM69_RS08940 (NCTC10921_01780)	-	1838172..1838357 (-)	186	WP_019771033.1	hypothetical protein	-
DQM69_RS08945 (NCTC10921_01781)	-	1838439..1838612 (-)	174	WP_019790623.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
DQM69_RS08950 (NCTC10921_01782)	-	1838634..1838819 (-)	186	WP_019769836.1	hypothetical protein	-
DQM69_RS08955 (NCTC10921_01783)	-	1839113..1839304 (-)	192	WP_019771035.1	bacteriocin	-
DQM69_RS08960 (NCTC10921_01784)	-	1839607..1839830 (-)	224	Protein_1696	garvicin Q family class II bacteriocin	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17684.35 Da
• Isoelectric Point: 4.9008

>NTDB_id=1139412 DQM69_RS08920 WP_002961571.1 1835269..1835751(-) (ssb) [Streptococcus sobrinus strain NCTC10921]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRATREANGTGSYNAGGNSSSNFGGGQQQATPNFGRDESPFGNSNPMDISDDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=1139412 DQM69_RS08920 WP_002961571.1 1835269..1835751(-) (ssb) [Streptococcus sobrinus strain NCTC10921]
ATGATTAATAATGTCGTACTCGTGGGTCGTATGACTCGGGATGCCGAGCTTCGTTACACCCCATCCAATCAAGCTGTTGC
AACCTTCAGTTTAGCTGTTAACCGCAACTTCAAAAACCAAAATGGTGAGCGTGAGGCTGATTTCATCAACTGTGTTATCT
GGCGTCAGCAAGCCGAAAACTTGGCCAATTGGGCTAAGAAAGGGGCTTTGATTGGGATTACAGGTCGCATTCAGACGCGT
AATTATGAAAACCAACAAGGTCAACGGGTTTATGTAACCGAGGTTGTCGCTGACAATTTCCAACTTCTGGAAAGTCGTGC
CACTCGGGAAGCTAACGGTACAGGTTCCTACAATGCTGGCGGCAATAGCTCATCAAACTTTGGTGGTGGCCAACAGCAAG
CAACACCGAACTTCGGCCGTGATGAAAGTCCATTTGGTAATTCTAACCCAATGGATATTTCCGATGACGACCTTCCATTC
TAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	60.588	100	0.644
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.803	100	0.625
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.054	69.375	0.375
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	68.125	0.369
ssbB/cilA	Streptococcus pneumoniae TIGR4	53.211	68.125	0.362