Detailed information NTG1139242

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: DQM97_RS09200
• Genome accession: NZ_LS483378
• Coordinates: 1882015..1882497 (-)
• Length: 160 a.a.
• NCBI ID: WP_002961571.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain NCTC12279
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1877015..1887497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM97_RS09175 (NCTC12279_01847)	rpoZ	1878460..1878777 (-)	318	WP_002961559.1	DNA-directed RNA polymerase subunit omega	-
DQM97_RS09180 (NCTC12279_01848)	gmk	1878800..1879414 (-)	615	WP_002961561.1	guanylate kinase	-
DQM97_RS09185 (NCTC12279_01849)	-	1879625..1880569 (+)	945	WP_002961563.1	magnesium transporter CorA family protein	-
DQM97_RS09190 (NCTC12279_01850)	-	1880599..1881288 (+)	690	WP_002961565.1	DUF1129 domain-containing protein	-
DQM97_RS09195 (NCTC12279_01851)	rpsR	1881718..1881957 (-)	240	WP_002961569.1	30S ribosomal protein S18	-
DQM97_RS09200 (NCTC12279_01852)	ssb	1882015..1882497 (-)	483	WP_002961571.1	single-stranded DNA-binding protein	Machinery gene
DQM97_RS09205 (NCTC12279_01853)	rpsF	1882509..1882799 (-)	291	WP_002961573.1	30S ribosomal protein S6	-
DQM97_RS09210 (NCTC12279_01854)	-	1883254..1883925 (-)	672	WP_002961575.1	TMEM175 family protein	-
DQM97_RS10810 (NCTC12279_01855)	-	1884091..1884267 (-)	177	WP_169447861.1	hypothetical protein	-
DQM97_RS09215 (NCTC12279_01856)	-	1884728..1884901 (-)	174	WP_080651904.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
DQM97_RS09220 (NCTC12279_01857)	-	1884921..1885106 (-)	186	WP_019771033.1	hypothetical protein	-
DQM97_RS09225 (NCTC12279_01858)	-	1885189..1885362 (-)	174	WP_019769835.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
DQM97_RS09230 (NCTC12279_01859)	-	1885384..1885569 (-)	186	WP_019769836.1	hypothetical protein	-
DQM97_RS09235 (NCTC12279_01860)	-	1885863..1886054 (-)	192	WP_002963416.1	bacteriocin	-
DQM97_RS09240 (NCTC12279_01861)	-	1886356..1886580 (-)	225	WP_002963417.1	garvicin Q family class II bacteriocin	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17684.35 Da
• Isoelectric Point: 4.9008

>NTDB_id=1139242 DQM97_RS09200 WP_002961571.1 1882015..1882497(-) (ssb) [Streptococcus sobrinus strain NCTC12279]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRATREANGTGSYNAGGNSSSNFGGGQQQATPNFGRDESPFGNSNPMDISDDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=1139242 DQM97_RS09200 WP_002961571.1 1882015..1882497(-) (ssb) [Streptococcus sobrinus strain NCTC12279]
ATGATTAATAATGTCGTACTCGTGGGTCGTATGACTCGGGATGCCGAGCTTCGTTACACCCCATCCAATCAAGCTGTTGC
AACCTTCAGTTTAGCTGTTAACCGCAACTTCAAAAACCAAAATGGTGAGCGTGAGGCTGATTTCATCAACTGTGTTATCT
GGCGTCAGCAAGCCGAAAACTTGGCCAATTGGGCTAAGAAAGGGGCTTTGATTGGGATTACAGGTCGCATTCAGACGCGT
AATTATGAAAACCAACAAGGTCAACGGGTTTATGTAACCGAGGTTGTCGCTGACAATTTCCAACTTCTGGAAAGTCGTGC
CACTCGGGAAGCTAACGGTACAGGTTCCTACAATGCTGGCGGCAATAGCTCATCAAACTTTGGTGGTGGCCAACAGCAAG
CTACACCGAACTTCGGCCGTGATGAAAGTCCATTTGGTAATTCTAACCCAATGGATATTTCCGATGACGACCTTCCATTC
TAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	60.588	100	0.644
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.803	100	0.625
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.054	69.375	0.375
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	68.125	0.369
ssbB/cilA	Streptococcus pneumoniae TIGR4	53.211	68.125	0.362