Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   DQM54_RS10780 Genome accession   NZ_LS483375
Coordinates   2151448..2151612 (-) Length   54 a.a.
NCBI ID   WP_080998577.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 2146448..2156612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS10750 (NCTC3165_02140) pth 2147231..2147800 (-) 570 WP_111724267.1 aminoacyl-tRNA hydrolase -
  DQM54_RS10755 (NCTC3165_02141) ychF 2147873..2148988 (-) 1116 WP_008808030.1 redox-regulated ATPase YchF -
  DQM54_RS10770 (NCTC3165_02144) comE/comE2 2149310..2150077 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  DQM54_RS10775 (NCTC3165_02145) comD/comD1 2150074..2151432 (-) 1359 WP_111724324.1 competence system sensor histidine kinase ComD Regulator
  DQM54_RS10780 (NCTC3165_02146) comC/comC1 2151448..2151612 (-) 165 WP_080998577.1 bacteriocin Regulator
  DQM54_RS10790 (NCTC3165_02148) rlmH 2151898..2152377 (-) 480 WP_008808034.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQM54_RS10795 (NCTC3165_02149) htrA 2152571..2153764 (+) 1194 WP_111724268.1 S1C family serine protease Regulator
  DQM54_RS10800 (NCTC3165_02150) spo0J 2153830..2154594 (+) 765 WP_111724269.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6369.44 Da        Isoelectric Point: 11.2504

>NTDB_id=1139165 DQM54_RS10780 WP_080998577.1 2151448..2151612(-) (comC/comC1) [Streptococcus gordonii strain NCTC3165]
MKKKNKQNLLPKELQQFEILTDNKLQTVIGGSQKGVYASQRSFVPSWFRKIFRN

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1139165 DQM54_RS10780 WP_080998577.1 2151448..2151612(-) (comC/comC1) [Streptococcus gordonii strain NCTC3165]
ATGAAAAAGAAAAACAAACAAAATTTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGATAATAAACTTCAAAC
AGTCATTGGGGGATCTCAAAAAGGTGTTTATGCCAGTCAGAGATCATTTGTTCCAAGTTGGTTCCGTAAAATTTTTAGAA
ATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus gordonii str. Challis substr. CH1

55.556

100

0.556
  comC/comC2 Streptococcus gordonii strain NCTC7865

81.25

59.259

0.481

Multiple sequence alignment