Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DQO01_RS29310 Genome accession   NZ_LS483372
Coordinates   6270490..6271986 (+) Length   498 a.a.
NCBI ID   WP_053258637.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain NCTC10038     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6265490..6276986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO01_RS29280 (NCTC10038_05925) - 6266065..6266760 (+) 696 WP_053258633.1 HAD family hydrolase -
  DQO01_RS29285 (NCTC10038_05926) sutA 6266868..6267194 (-) 327 WP_053258634.1 transcriptional regulator SutA -
  DQO01_RS29290 (NCTC10038_05927) - 6267296..6267721 (-) 426 WP_017845176.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DQO01_RS29295 (NCTC10038_05928) - 6267933..6269273 (-) 1341 WP_053258635.1 ammonium transporter -
  DQO01_RS29300 (NCTC10038_05929) glnK 6269309..6269647 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  DQO01_RS29305 (NCTC10038_05930) - 6270069..6270329 (+) 261 WP_053258636.1 accessory factor UbiK family protein -
  DQO01_RS29310 (NCTC10038_05931) comM 6270490..6271986 (+) 1497 WP_053258637.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DQO01_RS29315 (NCTC10038_05932) - 6271983..6272567 (-) 585 WP_053258638.1 TetR/AcrR family transcriptional regulator -
  DQO01_RS29320 (NCTC10038_05933) - 6272680..6273594 (+) 915 WP_053258639.1 ABC transporter six-transmembrane domain-containing protein -
  DQO01_RS29325 (NCTC10038_05934) - 6273598..6275574 (-) 1977 WP_053258640.1 methyl-accepting chemotaxis protein -
  DQO01_RS29330 (NCTC10038_05935) - 6275753..6276673 (-) 921 WP_053258641.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53323.46 Da        Isoelectric Point: 8.0920

>NTDB_id=1139011 DQO01_RS29310 WP_053258637.1 6270490..6271986(+) (comM) [Pseudomonas fluorescens strain NCTC10038]
MSLAIVHSRAQIGVEAPAVSVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGQVPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSPAPLSHWPHRPFRQPHHSASAPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHVTVARETTALNPTQQD
GDNTAKASAEVAEARERQQRRQGCANAFLDLPGLRKHCGLAKADESWLESACERLTLSLRAAHRLLKVARTLADLEQVEN
ITRHHLAEALQYRPVAAG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1139011 DQO01_RS29310 WP_053258637.1 6270490..6271986(+) (comM) [Pseudomonas fluorescens strain NCTC10038]
ATGTCCCTCGCTATCGTCCACAGCCGCGCCCAGATTGGCGTCGAAGCCCCTGCCGTCAGCGTTGAAGTGCATATGGCCAA
CGGTCTGCCCTCCCTGACGCTGGTAGGCCTGCCGGAAACTGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TTAACTCAGCGCTGCAATACCCCGCCCGCCGCATCACCCTCAACCTCGCGCCTGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCCCTGGGGATTCTCGCAGCCAGCGTGCAGGTGCCGGCGTTGATGCTGGACGACGTGGAATGCCT
GGGGGAGCTGGCGCTGTCGGGTGAGGTGCGCGCAGTAAAAGGCGTGTTGCCGGCGGCGCTGGCAGCACGCAAGGCCGGGC
GCACCGTGATAGTGCCTCGGGCCAATGCCGAGGAAGCGTGCCTGGCGTCGGGGTTAAAGGTGATTGCGGTAGATCACTTG
CTGCAGGTGGTGGCGCACCTGAACGGGCAAGTACCGATTGAGCCCTACAAGTCCGACGGGCTGCTGTACCTGAACAAACC
CTATCCGGATTTGAGTGAGGTGCAAGGGCAGCTGGCGGCCAAACGCGCGTTGCTGATCGCGGCGGCGGGCGCGCATAACC
TGCTGTTCAGCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGTCGGCTGCCTGGGCTGCTACCGCCGTTGAGTGAA
CAGGAAGCCCTGGAAGTGGCGGCGATTCAATCGGTGGTCAGCCCGGCGCCCCTGAGCCATTGGCCGCACCGCCCGTTTCG
CCAGCCACACCACTCGGCTTCCGCGCCGGCACTGGTGGGCGGTGGTTCAAAGCCGCAACCTGGGGAAATTACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAGTTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGGCATATCGTGATTTCCCGGGCGCGGGACCGGGTGAGTTTCCCCGCGCGCTTTCAATTGGTGGCAGCCATGAACCCCTG
CCCTTGCGGCTATCTGGGCGACCCCAGCGGGCGTTGCCGCTGTACGCCGGAGCAGATCCAGCGCTATCGCAACAAACTCT
CCGGGCCATTGCTGGACCGCATCGACTTGCACGTCACTGTCGCGCGGGAAACCACCGCGCTGAACCCAACCCAACAGGAC
GGCGATAACACGGCGAAGGCGTCGGCAGAGGTCGCCGAGGCACGCGAGCGCCAGCAACGACGTCAAGGCTGCGCCAATGC
CTTTCTGGATCTGCCAGGGCTGCGCAAGCACTGCGGGCTGGCGAAAGCCGACGAAAGCTGGCTGGAAAGCGCCTGCGAAC
GGCTGACCTTGTCCCTGCGCGCAGCACATCGGTTGCTCAAAGTGGCGCGGACCCTGGCCGACCTTGAGCAAGTAGAGAAC
ATCACCCGCCATCATCTGGCAGAAGCGCTGCAATACCGGCCTGTGGCCGCTGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Glaesserella parasuis strain SC1401

55.6

100

0.558
  comM Haemophilus influenzae Rd KW20

55

100

0.552
  comM Legionella pneumophila str. Paris

51.21

99.598

0.51
  comM Legionella pneumophila strain ERS1305867

51.21

99.598

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47

Multiple sequence alignment