Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q426_RS04025 Genome accession   NZ_CP006770
Coordinates   856795..857640 (-) Length   281 a.a.
NCBI ID   WP_012515603.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus CY     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 851795..862640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q426_RS04010 (Q426_04290) - 853066..853779 (-) 714 WP_012677971.1 DUF3307 domain-containing protein -
  Q426_RS04015 (Q426_04295) - 853800..854447 (-) 648 WP_038674303.1 SatD family protein -
  Q426_RS04020 (Q426_04300) topA 854562..856694 (-) 2133 WP_038674305.1 type I DNA topoisomerase -
  Q426_RS04025 (Q426_04305) dprA 856795..857640 (-) 846 WP_012515603.1 DNA-processing protein DprA Machinery gene
  Q426_RS04030 (Q426_04310) - 857896..858669 (-) 774 WP_038674821.1 ribonuclease HII -
  Q426_RS04035 (Q426_04315) ylqF 858659..859513 (-) 855 WP_014622846.1 ribosome biogenesis GTPase YlqF -
  Q426_RS04040 (Q426_04320) - 860106..860738 (-) 633 Protein_800 putative bacteriocin export ABC transporter -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31374.30 Da        Isoelectric Point: 8.8428

>NTDB_id=113896 Q426_RS04025 WP_012515603.1 856795..857640(-) (dprA) [Streptococcus equi subsp. zooepidemicus CY]
MNNFELYKLKKAGLTNLNILNLIDYQQRNNKSLSLRDMAVVSCCKNPVLFIETYKQLNVALLKKEFNQFPSLSILDKQYP
LALREIYNPPVLLFYQGDLSLLEKPKLAVVGSRESSEIGTRSVYKIIKELKNHFVIVSGLARGIDTSAHLACLKAGGQTI
AVIGTGLDRYYPKENHQLQEFLSQRHLVLSEYGAGEAALSYHFPERNRIIAGLSRGVLVVEAKQRSGSLITCQLAMEEGR
DIFVVPDNILNGTSAGCLKLIKDGASCVTHGRDILSEYYYS

Nucleotide


Download         Length: 846 bp        

>NTDB_id=113896 Q426_RS04025 WP_012515603.1 856795..857640(-) (dprA) [Streptococcus equi subsp. zooepidemicus CY]
ATGAACAATTTTGAACTTTATAAATTAAAAAAGGCTGGGCTGACTAATTTAAATATTCTTAACCTTATTGACTACCAGCA
GCGTAATAATAAGTCTCTATCCCTTAGAGATATGGCAGTGGTTTCTTGCTGCAAAAATCCAGTTTTATTTATTGAAACCT
ACAAGCAATTAAATGTCGCCTTGTTAAAAAAGGAATTCAATCAGTTTCCGAGCTTATCTATCCTAGATAAGCAATACCCA
TTGGCTCTGAGGGAAATCTACAATCCTCCTGTTTTACTCTTTTATCAAGGTGATTTAAGCCTGTTAGAAAAACCTAAGCT
GGCAGTCGTTGGATCTAGAGAATCCAGTGAAATTGGGACGCGGTCTGTTTATAAAATCATTAAAGAGCTTAAGAATCACT
TTGTCATTGTCAGCGGGCTTGCTAGAGGTATTGATACCAGTGCTCATCTCGCTTGCTTGAAAGCAGGTGGGCAAACCATA
GCTGTTATCGGGACTGGCCTAGATCGCTACTATCCAAAGGAAAATCACCAGCTACAGGAGTTTTTATCTCAGCGTCATCT
TGTGCTCAGTGAGTATGGAGCTGGAGAGGCCGCCTTGTCTTATCATTTCCCTGAAAGAAACCGTATTATCGCAGGTCTTA
GTCGAGGTGTCCTTGTTGTTGAGGCTAAGCAGCGCTCTGGCTCTTTGATTACCTGTCAGCTAGCTATGGAAGAGGGACGT
GATATTTTTGTCGTACCTGACAATATTCTTAATGGTACATCAGCGGGCTGTTTGAAGCTGATCAAAGATGGTGCCAGCTG
TGTCACTCATGGCAGAGACATTCTTTCAGAATACTACTATTCTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

68.929

99.644

0.687
  dprA/cilB/dalA Streptococcus mitis SK321

59.286

99.644

0.591
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae D39

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae R6

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

58.929

99.644

0.587
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

58.571

99.644

0.584
  dprA Lactococcus lactis subsp. cremoris KW2

56.94

100

0.569
  dprA Bacillus subtilis subsp. subtilis str. 168

42.4

88.968

0.377

Multiple sequence alignment