Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   DQM56_RS00730 Genome accession   NZ_LS483368
Coordinates   125779..126213 (+) Length   144 a.a.
NCBI ID   WP_014622144.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120779..131213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS00700 (NCTC6176_00140) - 122090..122758 (+) 669 WP_043024949.1 ATP-binding cassette domain-containing protein -
  DQM56_RS00705 (NCTC6176_00141) comGA/cglA 122914..123852 (+) 939 WP_111710107.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM56_RS00710 (NCTC6176_00142) comGB 123785..124818 (+) 1034 Protein_105 competence type IV pilus assembly protein ComGB -
  DQM56_RS00715 (NCTC6176_00143) comGC/cglC 124819..125142 (+) 324 WP_012514782.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM56_RS00720 (NCTC6176_00144) comGD 125120..125545 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  DQM56_RS00725 (NCTC6176_00145) comGE 125550..125792 (+) 243 WP_207622334.1 competence type IV pilus minor pilin ComGE -
  DQM56_RS00730 (NCTC6176_00146) comYF 125779..126213 (+) 435 WP_014622144.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM56_RS00735 (NCTC6176_00147) comGG 126191..126553 (+) 363 WP_012677238.1 competence type IV pilus minor pilin ComGG -
  DQM56_RS00740 (NCTC6176_00148) comYH 126615..127568 (+) 954 WP_012514788.1 class I SAM-dependent methyltransferase Machinery gene
  DQM56_RS00745 (NCTC6176_00149) - 127628..128827 (+) 1200 WP_111677653.1 acetate kinase -
  DQM56_RS00750 (NCTC6176_00150) - 129199..129813 (-) 615 WP_021320266.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16185.72 Da        Isoelectric Point: 10.1988

>NTDB_id=1138877 DQM56_RS00730 WP_014622144.1 125779..126213(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITTVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1138877 DQM56_RS00730 WP_014622144.1 125779..126213(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
TTGAAAGACAGTAGGCTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTATTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAACGGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

52.083

100

0.521
  comYF Streptococcus mutans UA159

51.389

100

0.514
  comGF/cglF Streptococcus mitis SK321

50.365

95.139

0.479
  comGF/cglF Streptococcus mitis NCTC 12261

49.635

95.139

0.472
  comGF/cglF Streptococcus pneumoniae Rx1

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae D39

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae R6

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae TIGR4

48.175

95.139

0.458
  comGF Lactococcus lactis subsp. cremoris KW2

46.429

97.222

0.451

Multiple sequence alignment