Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DQM55_RS11685 Genome accession   NZ_LS483364
Coordinates   2329177..2330349 (+) Length   390 a.a.
NCBI ID   WP_111676898.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11086     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2324177..2335349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS11660 (NCTC11086_02357) comE 2325957..2326721 (-) 765 WP_002899424.1 competence system response regulator transcription factor ComE Regulator
  DQM55_RS11665 (NCTC11086_02358) comD 2326727..2328061 (-) 1335 WP_111676894.1 competence system sensor histidine kinase ComD -
  DQM55_RS11670 (NCTC11086_02359) - 2328089..2328196 (-) 108 WP_032909851.1 hypothetical protein -
  DQM55_RS11680 (NCTC11086_02361) rlmH 2328494..2328973 (-) 480 WP_111676896.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQM55_RS11685 (NCTC11086_02362) htrA 2329177..2330349 (+) 1173 WP_111676898.1 S1C family serine protease Regulator
  DQM55_RS11690 (NCTC11086_02363) spo0J 2330413..2331174 (+) 762 WP_172454777.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 390 a.a.        Molecular weight: 40898.71 Da        Isoelectric Point: 4.8344

>NTDB_id=1138703 DQM55_RS11685 WP_111676898.1 2329177..2330349(+) (htrA) [Streptococcus sanguinis strain NCTC11086]
MKNSSNAIKKALLLFAVLIVGFIGGSLGNYVTTLVTSRVKMNGNSTTSVTTSYKNSTDISEAVKKVQNAVVSVITYAESS
SSVINDESSNDESQISSEGSGVIYKKDGKSAYLVTNTHVLNGSTNVDILLADGNKVPGEVVGSDVYSDISVVKISSEKVT
DVAEFGDSKSLTVGETAIAIGSPLGTEYANSVTQGIISSLGRNVTLQSENGENISTTALQTDAAINPGNSGGPLINIQGQ
VIGITSSKISTNGQTSVEGMGFAIPSNDVVNIINQLEKNGTVTRPALGIQMMDLSNLTTSDFSKLNLPSSVKSGILVRSV
QQGMPADGKLQKNDVITKVDNTDVESTSDLQSALYKHSIGDEVEITYYRDGKSQTVKIKLTKSTKELSSN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=1138703 DQM55_RS11685 WP_111676898.1 2329177..2330349(+) (htrA) [Streptococcus sanguinis strain NCTC11086]
ATGAAAAACTCTTCAAATGCCATCAAAAAGGCTTTATTGCTTTTTGCAGTGTTAATTGTAGGTTTTATCGGCGGAAGTTT
AGGGAATTATGTTACTACATTAGTAACTTCACGTGTAAAAATGAATGGAAATTCAACAACCAGTGTAACTACTTCATATA
AAAACTCTACAGACATTTCAGAAGCTGTGAAAAAGGTTCAAAATGCGGTTGTTTCAGTAATTACTTATGCTGAATCTTCT
AGCAGCGTTATCAATGATGAATCTTCCAACGATGAATCACAAATCTCCAGTGAAGGTTCTGGCGTAATTTATAAAAAAGA
CGGAAAATCAGCCTATCTGGTAACCAACACCCACGTTCTTAACGGATCAACCAATGTAGATATCTTGCTAGCTGATGGAA
ACAAGGTTCCAGGAGAAGTAGTTGGATCAGATGTTTATTCAGATATTTCTGTCGTTAAAATTAGCTCTGAAAAAGTAACT
GATGTTGCTGAATTTGGAGATTCTAAATCTCTGACAGTTGGTGAGACAGCTATTGCTATCGGAAGTCCTCTTGGAACAGA
ATACGCTAACTCTGTCACACAAGGAATTATTTCTAGTTTAGGCAGAAACGTTACATTACAATCTGAAAATGGTGAAAATA
TTTCAACAACTGCACTGCAAACAGATGCTGCAATCAATCCTGGTAACTCTGGCGGCCCATTGATTAACATCCAAGGACAA
GTTATTGGGATTACTTCAAGTAAAATTTCAACAAATGGCCAAACCTCTGTTGAAGGGATGGGATTTGCCATTCCATCTAA
TGATGTCGTAAATATTATCAATCAACTTGAGAAAAATGGAACAGTCACACGTCCTGCTTTAGGGATTCAAATGATGGATT
TATCTAATCTGACAACTTCTGATTTTTCTAAATTAAATCTTCCTTCTTCAGTGAAATCAGGTATTCTTGTTCGCTCTGTT
CAGCAAGGGATGCCTGCTGATGGCAAGCTTCAAAAAAATGACGTCATTACAAAAGTAGATAATACAGATGTGGAATCCAC
TAGTGATTTACAATCTGCTCTCTACAAGCATAGTATTGGAGATGAAGTAGAAATTACTTATTATCGAGATGGTAAATCTC
AAACAGTCAAAATCAAACTCACTAAATCAACAAAAGAGTTAAGCTCAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

67.677

100

0.687

  htrA Streptococcus mitis NCTC 12261

64.122

100

0.646

  htrA Streptococcus pneumoniae Rx1

64.122

100

0.646

  htrA Streptococcus pneumoniae D39

64.122

100

0.646

  htrA Streptococcus pneumoniae R6

64.122

100

0.646

  htrA Streptococcus pneumoniae TIGR4

64.122

100

0.646

  htrA Streptococcus mutans UA159

54.937

100

0.556


Multiple sequence alignment