Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM53_RS01985 Genome accession   NZ_LS483361
Coordinates   366871..368841 (+) Length   656 a.a.
NCBI ID   WP_111715178.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 361871..373841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS01965 (NCTC6179_00398) sufU 361921..362397 (+) 477 WP_111715171.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DQM53_RS01970 (NCTC6179_00399) sufB 362390..363808 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  DQM53_RS01975 (NCTC6179_00400) - 363982..365163 (-) 1182 WP_111715174.1 serine hydrolase -
  DQM53_RS01980 (NCTC6179_00401) pbp3 365302..366540 (-) 1239 WP_111715176.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM53_RS01985 (NCTC6179_00402) amiA 366871..368841 (+) 1971 WP_111715178.1 peptide ABC transporter substrate-binding protein Regulator
  DQM53_RS01990 (NCTC6179_00403) amiC 368907..370409 (+) 1503 WP_111715181.1 ABC transporter permease Regulator
  DQM53_RS01995 (NCTC6179_00404) amiD 370409..371335 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  DQM53_RS02000 (NCTC6179_00405) amiE 371344..372414 (+) 1071 WP_111715184.1 ABC transporter ATP-binding protein Regulator
  DQM53_RS02005 (NCTC6179_00406) amiF 372407..373330 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71972.30 Da        Isoelectric Point: 4.9448

>NTDB_id=1138507 DQM53_RS01985 WP_111715178.1 366871..368841(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAIDGKSEALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSQGKEFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
AQGFYAETPEQQDYDIISTWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESKDVVAATGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKAIPFSGGFSWAGAKGPLAYKGMKLQDKPVTAKQFEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1138507 DQM53_RS01985 WP_111715178.1 366871..368841(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAGTATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTTGATGGTCTTTTGGAAAATGACGAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGGCTAACCTATACTTACACGCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCGATTGATGGCAAGT
CTGAAGCTTTATATGTTGTCGAAGATTCCATCAAAAATTTGAAAGCTTACCAAAATGGAGAGGTCGATTTCAAAGAGGTC
GGTGTTAAAGCCCTTGACGATAAAACCGTTCAATATACTTTGAACAAACCGGAAAGTTACTGGAACTCAAAAACAACTTA
TAGCGTTCTCTTCCCAGTCAATGCAAAATTCTTGAAATCACAAGGTAAAGAGTTTGGAACAACAGACCCATCATCAATCC
TTGTTAATGGTGCTTATTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTATTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGATCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGAATGTTGACTGGTGATATCCGTCATTTAACATGGAACTTGAACCGTACTTCCTTCAAAAACACTAAGAAA
GACCCAGCACAACAAGATGCTGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTCGATCG
TGCATCATTCCAAGCACAAACTGCAGGTCAGGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACAATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTTGTTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCTCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCAACATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTACAGGCCTTGATACCTACCAAACTTTACTTGACGAAGCAGCAGCGATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCGGTTGTGGCCTTGGG
TGGTACTCCTCGTGTTTCTAAAGCTATTCCATTTAGCGGCGGCTTCTCTTGGGCAGGTGCTAAAGGACCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATTCGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.53

100

0.509
  amiA3 Streptococcus thermophilus LMG 18311

49.396

100

0.498
  amiA3 Streptococcus thermophilus LMD-9

49.094

100

0.495

Multiple sequence alignment