Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQM53_RS01990 Genome accession   NZ_LS483361
Coordinates   368907..370409 (+) Length   500 a.a.
NCBI ID   WP_111715181.1    Uniprot ID   A0A9X8XF75
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 363907..375409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS01975 (NCTC6179_00400) - 363982..365163 (-) 1182 WP_111715174.1 serine hydrolase -
  DQM53_RS01980 (NCTC6179_00401) pbp3 365302..366540 (-) 1239 WP_111715176.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM53_RS01985 (NCTC6179_00402) amiA 366871..368841 (+) 1971 WP_111715178.1 peptide ABC transporter substrate-binding protein Regulator
  DQM53_RS01990 (NCTC6179_00403) amiC 368907..370409 (+) 1503 WP_111715181.1 ABC transporter permease Regulator
  DQM53_RS01995 (NCTC6179_00404) amiD 370409..371335 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  DQM53_RS02000 (NCTC6179_00405) amiE 371344..372414 (+) 1071 WP_111715184.1 ABC transporter ATP-binding protein Regulator
  DQM53_RS02005 (NCTC6179_00406) amiF 372407..373330 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55944.24 Da        Isoelectric Point: 10.1683

>NTDB_id=1138508 DQM53_RS01990 WP_111715181.1 368907..370409(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDNAS
KVDSSVTTEATSANKVIYEKYIHSLGNGWQLKRFPVSKKFYATRKIPIYERVWNFFSNLVVIDHPWKIQDEDNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYANGKFPYLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYIIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1138508 DQM53_RS01990 WP_111715181.1 368907..370409(+) (amiC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGAAAAAATACATTTTAAACCGTATCTTACGATCGTTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACCATCGT
ATACACCCTCGTCCCTGTCGGTCTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGATAAAAAGG
CTGCTTATGAAAGCTTAACCTTTCAACGTATGGGGTATATTAATTACTTTTCAAGTAAAGAGTTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAGGTTATTTATGAGAAATATATTCATTCCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTAAGATTCCTATTTACGAACGTGTTTGGA
ACTTCTTTTCAAACTTAGTTGTTATTGACCATCCTTGGAAGATTCAAGACGAGGATAACCCTAATCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCACTTGTTGGATCGGGGACACAACACAAATACCTTGTTTATGCCAATGG
CAAGTTCCCTTACCTTCACCAAAACCTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGACAAGGACGAACAGCTCTTCAAGATGTTACTTTCCCATCAGGAGTGACTAAAAAATCATCA
GTGGATATTTACAGTCGTACTTATAAAAATCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAGGGCGATTC
ATATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATATTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTTAAAAATACCTATTTTGATCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGAAGTATGGTTGGCTTGCC
AGATAGTTTTCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGCTATCTGGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCCCGCTCAAAAGGG
TTATCAGAATCTGAAATTTATAGAGACCACCTTTTCAAAAATGCTATGGTTCCGATTGTCTCAGGTATTCCGGCAAGTAT
TATACTTGCGATTGGTGGAGCGACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAGATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCAATGATTGTTGGGTTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.8

100

0.598
  amiC Streptococcus thermophilus LMD-9

59.6

100

0.596
  amiC Streptococcus thermophilus LMG 18311

59.6

100

0.596

Multiple sequence alignment