Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DQM46_RS07415 Genome accession   NZ_LS483357
Coordinates   1435731..1436441 (-) Length   236 a.a.
NCBI ID   WP_002985645.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8326     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1430731..1441441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM46_RS07400 (NCTC8326_01489) rnc 1432438..1433130 (-) 693 WP_111678895.1 ribonuclease III -
  DQM46_RS07405 (NCTC8326_01490) vicX 1433573..1434382 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQM46_RS07410 (NCTC8326_01491) vicK 1434386..1435738 (-) 1353 WP_002990673.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM46_RS07415 (NCTC8326_01492) vicR 1435731..1436441 (-) 711 WP_002985645.1 response regulator YycF Regulator
  DQM46_RS07420 (NCTC8326_01493) - 1436603..1437637 (-) 1035 WP_011528375.1 DUF3114 domain-containing protein -
  DQM46_RS07425 (NCTC8326_01494) - 1437693..1438940 (-) 1248 WP_011528374.1 AMP-binding protein -
  DQM46_RS07430 (NCTC8326_01495) - 1438897..1440046 (-) 1150 Protein_1379 acetyl-CoA C-acyltransferase -
  DQM46_RS07435 (NCTC8326_01496) - 1440015..1440584 (-) 570 WP_021299212.1 hypothetical protein -
  DQM46_RS07440 (NCTC8326_01497) - 1440719..1441432 (-) 714 WP_302479682.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27083.99 Da        Isoelectric Point: 4.9038

>NTDB_id=1138342 DQM46_RS07415 WP_002985645.1 1435731..1436441(-) (vicR) [Streptococcus pyogenes strain NCTC8326]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1138342 DQM46_RS07415 WP_002985645.1 1435731..1436441(-) (vicR) [Streptococcus pyogenes strain NCTC8326]
ATGAAAAAAATACTTATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAATTTGACAAAAGAAGGTTATGA
CATTGTTACAGCTTTTGATGGACGCGAAGCGGTAACCATTTTTGAAGAAGAAAAGCCAGATTTAATTATTCTTGATTTGA
TGCTCCCTGAGTTGGACGGTCTTGAAGTAGCCAAGGAAATTCGTAAAACCAGTCATGTCCCGATTATTATGTTGTCGGCT
AAAGATAGTGAGTTTGACAAGGTTATTGGACTTGAAATTGGGGCTGATGATTACGTGACCAAGCCCTTTTCTAATCGGGA
ATTGCTGGCGCGTGTCAAGGCTCATCTGCGTCGTACCGAAACTATTGAAACGGCTGTTGCAGAAGAAAATGCTTCTTCAG
GTACACAGGAACTAACCATTGGTAATTTACAGATTTTACCAGATGCGTTTGTTGCTAAAAAACATGGTCAAGAGGTAGAG
TTGACTCATCGTGAATTTGAACTATTGCATCATCTAGCTAACCATATGGGTCAGGTGATGACACGAGAACACTTATTGGA
AATTGTTTGGGGATATGATTATTTTGGCGATGTGCGCACGGTTGATGTGACTGTTCGTCGTCTCCGTGAAAAAATTGAAG
ACACACCAAGTCGTCCTGAGTATATTTTAACAAGACGTGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.06

99.153

0.784
  covR Streptococcus salivarius strain HSISS4

44.828

98.305

0.441
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

36.91

98.729

0.364

Multiple sequence alignment