Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DQL23_RS10770 Genome accession   NZ_LS483341
Coordinates   2186644..2187408 (+) Length   254 a.a.
NCBI ID   WP_045772585.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2161911..2187408 2186644..2187408 within 0


Gene organization within MGE regions


Location: 2161911..2187408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS10555 (NCTC7865_02129) mreC 2161911..2162726 (-) 816 WP_060554277.1 rod shape-determining protein MreC -
  DQL23_RS10560 (NCTC7865_02129) - 2162794..2162881 (-) 88 WP_060554277.1 tRNA-Ser -
  DQL23_RS10565 (NCTC7865_02129) - 2162892..2162965 (-) 74 WP_060554277.1 tRNA-Ile -
  DQL23_RS10570 (NCTC7865_02129) - 2163001..2163071 (-) 71 WP_060554277.1 tRNA-Gly -
  DQL23_RS10575 (NCTC7865_02129) - 2163085..2163157 (-) 73 WP_060554277.1 tRNA-Phe -
  DQL23_RS10580 (NCTC7865_02129) - 2163161..2163234 (-) 74 WP_060554277.1 tRNA-Met -
  DQL23_RS10585 (NCTC7865_02129) - 2163254..2163343 (-) 90 WP_060554277.1 tRNA-Ser -
  DQL23_RS10590 (NCTC7865_02129) - 2163360..2163433 (-) 74 WP_060554277.1 tRNA-Ile -
  DQL23_RS10595 (NCTC7865_02129) - 2163447..2163520 (-) 74 WP_060554277.1 tRNA-Met -
  DQL23_RS10600 (NCTC7865_02129) - 2163527..2163600 (-) 74 WP_060554277.1 tRNA-Pro -
  DQL23_RS10605 (NCTC7865_02129) - 2163629..2163702 (-) 74 WP_060554277.1 tRNA-Arg -
  DQL23_RS10610 (NCTC7865_02129) - 2163716..2163801 (-) 86 WP_060554277.1 tRNA-Leu -
  DQL23_RS10615 (NCTC7865_02129) - 2163807..2163878 (-) 72 WP_060554277.1 tRNA-Gly -
  DQL23_RS10620 (NCTC7865_02129) - 2163899..2163971 (-) 73 WP_060554277.1 tRNA-Thr -
  DQL23_RS10625 (NCTC7865_02129) - 2163982..2164063 (-) 82 WP_060554277.1 tRNA-Leu -
  DQL23_RS10630 (NCTC7865_02129) - 2164069..2164141 (-) 73 WP_060554277.1 tRNA-Lys -
  DQL23_RS10635 (NCTC7865_02129) - 2164169..2164241 (-) 73 WP_060554277.1 tRNA-Asp -
  DQL23_RS10640 (NCTC7865_02129) - 2164244..2164316 (-) 73 WP_060554277.1 tRNA-Val -
  DQL23_RS10645 (NCTC7865_02129) rrf 2164449..2164564 (-) 116 WP_060554277.1 5S ribosomal RNA -
  DQL23_RS10650 (NCTC7865_02129) - 2164645..2167544 (-) 2900 WP_060554277.1 23S ribosomal RNA -
  DQL23_RS10655 (NCTC7865_02129) - 2167664..2167736 (-) 73 WP_060554277.1 tRNA-Ala -
  DQL23_RS10660 (NCTC7865_02129) - 2167791..2169347 (-) 1557 WP_060554277.1 16S ribosomal RNA -
  DQL23_RS10665 (NCTC7865_02151) comR/comR2 2169631..2170113 (-) 483 WP_045772576.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL23_RS10670 (NCTC7865_02151) - 2170315..2170388 (-) 74 WP_045772576.1 tRNA-Asn -
  DQL23_RS10675 (NCTC7865_02151) - 2170394..2170465 (-) 72 WP_045772576.1 tRNA-Glu -
  DQL23_RS10680 (NCTC7865_02154) ftsH 2170642..2172624 (-) 1983 WP_060553302.1 ATP-dependent zinc metalloprotease FtsH -
  DQL23_RS10685 (NCTC7865_02155) hpt 2172643..2173185 (-) 543 WP_060553301.1 hypoxanthine phosphoribosyltransferase -
  DQL23_RS10690 (NCTC7865_02156) tilS 2173190..2174467 (-) 1278 WP_060553300.1 tRNA lysidine(34) synthetase TilS -
  DQL23_RS10695 (NCTC7865_02157) - 2174464..2175744 (-) 1281 WP_045772579.1 serine hydrolase -
  DQL23_RS10700 - 2175744..2175863 (-) 120 WP_037622626.1 SP_0009 family protein -
  DQL23_RS10705 (NCTC7865_02158) - 2175866..2176234 (-) 369 WP_012131073.1 FtsB family cell division protein -
  DQL23_RS10710 (NCTC7865_02159) - 2176227..2176493 (-) 267 WP_012131074.1 RNA-binding S4 domain-containing protein -
  DQL23_RS10715 (NCTC7865_02160) mfd 2176559..2180062 (-) 3504 WP_111705915.1 transcription-repair coupling factor -
  DQL23_RS10720 (NCTC7865_02161) pth 2180055..2180624 (-) 570 WP_060553299.1 aminoacyl-tRNA hydrolase -
  DQL23_RS10725 (NCTC7865_02162) ychF 2180698..2181813 (-) 1116 WP_008808030.1 redox-regulated ATPase YchF -
  DQL23_RS10730 (NCTC7865_02162) - 2181923..2181996 (-) 74 WP_008808030.1 tRNA-Asn -
  DQL23_RS10735 (NCTC7865_02162) - 2182002..2182073 (-) 72 WP_008808030.1 tRNA-Glu -
  DQL23_RS10740 (NCTC7865_02165) comE/comE2 2182135..2182902 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  DQL23_RS10745 (NCTC7865_02166) comD/comD2 2182899..2184257 (-) 1359 WP_060553298.1 competence system sensor histidine kinase ComD Regulator
  DQL23_RS10750 (NCTC7865_02167) comC/comC2 2184273..2184425 (-) 153 WP_008808033.1 bacteriocin Regulator
  DQL23_RS10755 (NCTC7865_02167) - 2184596..2184669 (-) 74 WP_008808033.1 tRNA-Arg -
  DQL23_RS10760 (NCTC7865_02169) rlmH 2184712..2185191 (-) 480 WP_060553297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQL23_RS10765 (NCTC7865_02170) htrA 2185385..2186578 (+) 1194 WP_060553296.1 S1C family serine protease Regulator
  DQL23_RS10770 (NCTC7865_02171) spo0J 2186644..2187408 (+) 765 WP_045772585.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29304.04 Da        Isoelectric Point: 9.4945

>NTDB_id=1137514 DQL23_RS10770 WP_045772585.1 2186644..2187408(+) (spo0J) [Streptococcus gordonii strain NCTC7865]
MENYQYILIKDIHTNPYQPRKDFSIEKLNELANSIKENGLIQPIIVRKSSIIGYELLAGERRFRAAKIAGLTEIPALVKS
LSDDEMMKQAIIENLQREDLNPIEEAESYQHLIYKGLTHDEIAQIMGKSRPYITNLVRLLQLPDFVLKAVKEGHISQAHA
RLLIKLKEKDQKKWLEKIISSDISVRKLEKLLQTSPTKPKSENVQKIFIEEEEENLKKLLGVDVKISLSKKQTGKISISF
SNQEEYERIINSLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=1137514 DQL23_RS10770 WP_045772585.1 2186644..2187408(+) (spo0J) [Streptococcus gordonii strain NCTC7865]
ATGGAAAATTATCAATATATTTTAATTAAAGATATTCACACCAATCCCTATCAACCAAGAAAAGATTTTTCAATAGAGAA
ATTAAACGAGTTGGCAAATTCTATTAAAGAAAACGGATTAATCCAGCCTATTATCGTCAGGAAATCATCTATCATTGGAT
ACGAACTTTTAGCTGGGGAAAGAAGATTTAGGGCAGCTAAAATAGCAGGCTTAACTGAAATTCCTGCCTTAGTAAAATCA
CTAAGCGATGATGAAATGATGAAGCAGGCTATTATTGAAAATCTTCAAAGAGAGGATCTCAATCCAATAGAAGAAGCTGA
ATCTTATCAACATCTTATTTATAAGGGATTGACGCATGATGAAATCGCTCAGATTATGGGGAAATCAAGGCCTTATATTA
CAAATCTTGTTCGCTTGCTACAGCTACCTGATTTTGTCTTAAAAGCTGTAAAAGAAGGTCATATTTCTCAGGCTCATGCT
CGATTATTAATAAAACTTAAGGAAAAAGACCAGAAAAAATGGCTTGAAAAAATTATTTCTTCAGATATTTCTGTTAGAAA
ATTAGAGAAATTATTACAGACTTCTCCTACTAAGCCTAAGTCTGAAAATGTCCAAAAAATTTTTATAGAGGAAGAAGAAG
AAAATCTAAAGAAATTATTGGGAGTTGATGTAAAGATTAGTCTCTCTAAGAAACAAACTGGCAAAATCTCAATTTCTTTT
TCTAATCAGGAAGAATATGAAAGAATTATTAACAGTCTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.331

100

0.543

Multiple sequence alignment