Detailed information    

insolico Bioinformatically predicted

Overview

Name   pknB   Type   Regulator
Locus tag   DQL04_RS02690 Genome accession   NZ_LS483340
Coordinates   511610..513517 (+) Length   635 a.a.
NCBI ID   WP_047235721.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12062     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context

Location: 506610..518517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL04_RS02675 (NCTC12062_00529) fmt 508588..509523 (+) 936 WP_002988958.1 methionyl-tRNA formyltransferase -
  DQL04_RS02680 (NCTC12062_00530) rsmB 509513..510835 (+) 1323 WP_047235720.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  DQL04_RS02685 (NCTC12062_00531) - 510873..511613 (+) 741 WP_002983660.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  DQL04_RS02690 (NCTC12062_00532) pknB 511610..513517 (+) 1908 WP_047235721.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  DQL04_RS02695 (NCTC12062_00533) liaF 513640..514332 (+) 693 WP_011054833.1 cell wall-active antibiotics response protein LiaF -
  DQL04_RS02700 (NCTC12062_00534) - 514329..515333 (+) 1005 WP_002991890.1 sensor histidine kinase -
  DQL04_RS02705 (NCTC12062_00535) - 515326..515967 (+) 642 WP_047235722.1 response regulator transcription factor -
  DQL04_RS02710 (NCTC12062_00536) - 516004..517404 (+) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQL04_RS02715 (NCTC12062_00537) - 517404..517781 (+) 378 WP_009880466.1 S1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 635 a.a.        Molecular weight: 69179.45 Da        Isoelectric Point: 7.0436

>NTDB_id=1137418 DQL04_RS02690 WP_047235721.1 511610..513517(+) (pknB) [Streptococcus pyogenes strain NCTC12062]
MIQIGKLFAGRYRILKSIGRGGMADVYLANDLILDNEDVAIKVLRTNYQTDQVAVARFQREARAMAELNHPNIVAIRDIG
EEDGQQFLVMEYVDGADLKRYIQNHAPLSNNEVVRIMEEVLSAMTLAHQKGIVHRDLKPQNILLTKEGVVKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIMLFEMLTGHIPYDGDSAVTIALQHFQMPLPSIIEENHNVP
QALENVVIRATAKKLSDRYGSTFEMSRDLMTALSYNRSRERKIIFEDVESTKPLPKVASGPTASVKLSPPTPTVLTQESR
LDQTNQTNQTDALQPPTKKKKSGRFLGTLFKILFSFFIVGVALFTYLILTKPTSVKVPNVAGTSLKVAKQELYDVGLKVG
KIRQIESDTVAEGNVVRTDPKAGTAKRQGSSITLYVSIGNKGFDMENYKGLDYQEAMNSLIETYGVPKSKIKIERIVTNE
YPENTVISQSPSAGDKFNPNGKSKITLSVAVSDTITMPMVTEYSYADAVNTLTALGIDASRIKAYVPSSSSATGFVPIHS
PSSKAIVSGQSPYYGTSLSLSDKGEISLYLYPEETHSSSSSSSSTSSSNSSSTNDSTAPGSNTELSPSETTAQTP

Nucleotide


Download         Length: 1908 bp        

>NTDB_id=1137418 DQL04_RS02690 WP_047235721.1 511610..513517(+) (pknB) [Streptococcus pyogenes strain NCTC12062]
ATGATTCAGATTGGCAAATTATTTGCTGGTCGTTATCGCATTCTGAAATCTATTGGCCGCGGTGGTATGGCGGATGTTTA
TTTAGCAAATGATTTGATCTTGGATAATGAAGACGTTGCAATCAAGGTCTTGCGTACCAATTATCAAACAGATCAGGTAG
CAGTTGCGCGTTTCCAACGGGAAGCGCGGGCCATGGCTGAATTGAACCATCCCAATATTGTTGCCATCCGGGATATAGGT
GAAGAAGACGGACAGCAATTTTTAGTAATGGAATATGTGGATGGTGCTGACCTAAAGAGATACATTCAAAATCATGCTCC
ATTATCTAATAATGAAGTGGTTAGAATTATGGAAGAAGTCCTTTCTGCTATGACTTTAGCCCACCAAAAAGGAATTGTAC
ACAGAGATTTAAAACCTCAAAATATCCTACTAACTAAGGAGGGGGTTGTCAAAGTAACTGATTTCGGCATCGCAGTAGCC
TTTGCAGAAACAAGCTTGACACAAACTAATTCGATGTTAGGCAGTGTTCATTACTTGTCTCCAGAACAGGCTCGCGGCTC
CAAAGCGACGATTCAAAGTGATATTTATGCGATGGGGATTATGCTCTTTGAGATGTTGACAGGCCATATCCCTTATGATG
GCGATAGTGCTGTTACGATTGCCTTGCAACATTTTCAAATGCCTCTTCCATCTATTATCGAGGAGAACCACAATGTGCCA
CAAGCTTTGGAGAATGTTGTTATTCGAGCAACAGCCAAGAAATTAAGTGATCGTTACGGGTCAACCTTTGAAATGAGTCG
TGACTTAATGACGGCGCTTAGTTATAATCGTAGTCGGGAGCGTAAGATTATCTTTGAGGATGTTGAAAGTACCAAACCCC
TCCCCAAAGTGGCCTCAGGTCCCACCGCTTCTGTAAAATTGTCTCCCCCTACCCCAACAGTGTTAACACAGGAAAGTCGA
TTAGATCAAACTAATCAAACTAATCAAACAGATGCTTTACAGCCCCCCACCAAAAAGAAAAAAAGTGGTCGTTTTTTAGG
TACTTTATTCAAAATTCTTTTTTCTTTCTTTATTGTAGGTGTAGCACTCTTTACTTATCTTATACTAACTAAACCAACTT
CTGTGAAAGTTCCTAATGTAGCAGGCACTAGTCTTAAAGTTGCCAAACAAGAACTGTATGATGTTGGGCTAAAAGTGGGT
AAAATCAGGCAAATTGAGAGTGATACGGTTGCTGAGGGAAATGTAGTTAGAACAGATCCTAAAGCAGGAACAGCTAAGAG
GCAAGGCTCAAGCATTACGCTTTATGTGTCAATTGGAAACAAAGGTTTTGACATGGAAAACTACAAAGGACTAGATTATC
AAGAAGCTATGAATAGTTTGATAGAAACTTATGGTGTTCCAAAATCAAAAATCAAAATTGAGCGCATTGTAACTAATGAA
TATCCTGAAAATACAGTCATCAGTCAATCGCCAAGTGCGGGTGATAAATTTAATCCAAACGGAAAGTCTAAAATTACGCT
CAGTGTTGCTGTTAGTGATACGATCACTATGCCTATGGTAACAGAATATAGTTATGCAGATGCAGTCAATACCTTAACAG
CTTTAGGTATAGATGCATCTAGAATAAAAGCTTATGTGCCAAGCTCTAGCTCAGCAACGGGCTTTGTGCCAATTCATTCT
CCTAGTTCTAAAGCTATTGTCAGTGGTCAATCTCCTTACTATGGAACGTCTTTGAGTCTGTCTGATAAAGGAGAGATCAG
TCTTTACCTTTATCCAGAAGAAACACACTCTTCTAGTAGCTCATCGAGTTCAACGTCAAGTTCAAACAGTTCTTCAACAA
ATGATAGTACTGCACCAGGTAGCAACACTGAATTAAGCCCATCAGAAACTACTGCTCAAACACCTTAA

Domains

Predicted by InterproScan.

PASTA domain (PASTA)

(515-591)

PASTA domain (PASTA)

(444-509)

PASTA domain (PASTA)

(375-437)

Protein kinase domain (Pkinase)

(12-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

64.538

93.701

0.605
  stkP/pknB Streptococcus salivarius strain HSISS4

60.87

94.173

0.573
  stkP Streptococcus pneumoniae D39

57.617

80.63

0.465
  stkP Streptococcus pneumoniae R6

57.617

80.63

0.465
  stkP Streptococcus pneumoniae TIGR4

57.617

80.63

0.465
  stkP Streptococcus pneumoniae Rx1

57.422

80.63

0.463

Multiple sequence alignment