Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQL34_RS08010 Genome accession   NZ_LS483339
Coordinates   1511124..1512617 (-) Length   497 a.a.
NCBI ID   WP_064355564.1    Uniprot ID   A0A2X3UVI7
Organism   Streptococcus thermophilus strain NCTC12958     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506124..1517617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS07980 (NCTC12958_01665) - 1506254..1506631 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  DQL34_RS07985 (NCTC12958_01666) - 1506636..1507334 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  DQL34_RS07990 (NCTC12958_01667) - 1507346..1508131 (+) 786 WP_011681414.1 hypothetical protein -
  DQL34_RS07995 (NCTC12958_01668) amiF 1508181..1509110 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  DQL34_RS08000 (NCTC12958_01669) amiE 1509103..1510188 (-) 1086 WP_084828981.1 ABC transporter ATP-binding protein Regulator
  DQL34_RS08005 (NCTC12958_01670) amiD 1510198..1511124 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  DQL34_RS08010 (NCTC12958_01671) amiC 1511124..1512617 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  DQL34_RS08015 (NCTC12958_01672) amiA3 1512678..1514651 (-) 1974 WP_111679665.1 peptide ABC transporter substrate-binding protein Regulator
  DQL34_RS08020 - 1514887..1515077 (-) 191 Protein_1520 IS3 family transposase -
  DQL34_RS12505 - 1515071..1515481 (-) 411 Protein_1521 ATP-binding cassette domain-containing protein -
  DQL34_RS12510 (NCTC12958_01675) - 1515513..1515827 (-) 315 Protein_1522 TatD family hydrolase -
  DQL34_RS08040 (NCTC12958_01676) - 1516174..1517367 (+) 1194 WP_100262689.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55866.73 Da        Isoelectric Point: 10.0536

>NTDB_id=1137375 DQL34_RS08010 WP_064355564.1 1511124..1512617(-) (amiC) [Streptococcus thermophilus strain NCTC12958]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1137375 DQL34_RS08010 WP_064355564.1 1511124..1512617(-) (amiC) [Streptococcus thermophilus strain NCTC12958]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3UVI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96

Multiple sequence alignment