Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQL34_RS08000 Genome accession   NZ_LS483339
Coordinates   1509103..1510188 (-) Length   361 a.a.
NCBI ID   WP_084828981.1    Uniprot ID   A0A0E2Q0D9
Organism   Streptococcus thermophilus strain NCTC12958     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504103..1515188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS07970 (NCTC12958_01663) - 1504467..1505282 (-) 816 WP_024010001.1 Cof-type HAD-IIB family hydrolase -
  DQL34_RS07975 (NCTC12958_01664) - 1505275..1506069 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  DQL34_RS07980 (NCTC12958_01665) - 1506254..1506631 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  DQL34_RS07985 (NCTC12958_01666) - 1506636..1507334 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  DQL34_RS07990 (NCTC12958_01667) - 1507346..1508131 (+) 786 WP_011681414.1 hypothetical protein -
  DQL34_RS07995 (NCTC12958_01668) amiF 1508181..1509110 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  DQL34_RS08000 (NCTC12958_01669) amiE 1509103..1510188 (-) 1086 WP_084828981.1 ABC transporter ATP-binding protein Regulator
  DQL34_RS08005 (NCTC12958_01670) amiD 1510198..1511124 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  DQL34_RS08010 (NCTC12958_01671) amiC 1511124..1512617 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  DQL34_RS08015 (NCTC12958_01672) amiA3 1512678..1514651 (-) 1974 WP_111679665.1 peptide ABC transporter substrate-binding protein Regulator
  DQL34_RS08020 - 1514887..1515077 (-) 191 Protein_1520 IS3 family transposase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39806.59 Da        Isoelectric Point: 4.8014

>NTDB_id=1137373 DQL34_RS08000 WP_084828981.1 1509103..1510188(-) (amiE) [Streptococcus thermophilus strain NCTC12958]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGKDL
TKFKSHQDWAAIRGAKIATIFQDPMTSLNPIKTIGSQIIEVIVKHQGKTAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLAGDNGKLFSIPGTPPSLYTPVVGDAFALRSDYALQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVDKPAVIQNLHEKILANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1137373 DQL34_RS08000 WP_084828981.1 1509103..1510188(-) (amiE) [Streptococcus thermophilus strain NCTC12958]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCTCTTGATTTAGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGGAAATCAGTCT
TGACTAAAACTTTTACAGGGATGCTGGAAGAAAATGGTCGTGTAGCTAGCGGATCTATCGACTACCGTGGCAAAGACTTG
ACTAAATTTAAGAGTCACCAAGATTGGGCAGCTATCCGTGGAGCTAAGATTGCAACTATTTTCCAAGATCCAATGACCAG
TCTTAACCCAATTAAGACTATCGGAAGTCAAATTATTGAAGTTATTGTTAAGCACCAAGGGAAAACAGCCAAGGAAGCTA
AAAAAATGGCAATTGATTACATGGACAAGGTTGGTATTCCAGATGCTGAAAAACGTTTCAATGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCGGTCA
TTTTCATTACCCATGACCTTGGCGTCGTAGCAAGTATCGCGGACAAGGTTGCTGTCATGTATGCTGGCGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGTCTGCCACAATTGGC
TGGTGATAATGGAAAACTCTTCTCAATTCCAGGGACGCCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGATTATGCTTTGCAGATTGATTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCGCCAAAAGTTGATAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCTAGCCAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2Q0D9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

99.723

100

0.997
  amiE Streptococcus thermophilus LMD-9

99.723

100

0.997
  amiE Streptococcus salivarius strain HSISS4

96.676

100

0.967
  oppD Streptococcus mutans UA159

54.441

96.676

0.526

Multiple sequence alignment