Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQL34_RS07995 Genome accession   NZ_LS483339
Coordinates   1508181..1509110 (-) Length   309 a.a.
NCBI ID   WP_082245810.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503181..1514110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS07970 (NCTC12958_01663) - 1504467..1505282 (-) 816 WP_024010001.1 Cof-type HAD-IIB family hydrolase -
  DQL34_RS07975 (NCTC12958_01664) - 1505275..1506069 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  DQL34_RS07980 (NCTC12958_01665) - 1506254..1506631 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  DQL34_RS07985 (NCTC12958_01666) - 1506636..1507334 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  DQL34_RS07990 (NCTC12958_01667) - 1507346..1508131 (+) 786 WP_011681414.1 hypothetical protein -
  DQL34_RS07995 (NCTC12958_01668) amiF 1508181..1509110 (-) 930 WP_082245810.1 ATP-binding cassette domain-containing protein Regulator
  DQL34_RS08000 (NCTC12958_01669) amiE 1509103..1510188 (-) 1086 WP_084828981.1 ABC transporter ATP-binding protein Regulator
  DQL34_RS08005 (NCTC12958_01670) amiD 1510198..1511124 (-) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  DQL34_RS08010 (NCTC12958_01671) amiC 1511124..1512617 (-) 1494 WP_064355564.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35143.27 Da        Isoelectric Point: 6.5989

>NTDB_id=1137372 DQL34_RS07995 WP_082245810.1 1508181..1509110(-) (amiF) [Streptococcus thermophilus strain NCTC12958]
MPEKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1137372 DQL34_RS07995 WP_082245810.1 1508181..1509110(-) (amiF) [Streptococcus thermophilus strain NCTC12958]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAAAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCACACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981

Multiple sequence alignment