Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DQL47_RS10185 Genome accession   NZ_LS483328
Coordinates   2125917..2127140 (+) Length   407 a.a.
NCBI ID   WP_043039587.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2120917..2132140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS10160 (NCTC12090_02059) - 2121567..2124152 (+) 2586 WP_111690533.1 YfhO family protein -
  DQL47_RS10180 (NCTC12090_02063) rlmH 2125228..2125707 (-) 480 WP_012678751.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQL47_RS10185 (NCTC12090_02064) htrA 2125917..2127140 (+) 1224 WP_043039587.1 S1C family serine protease Regulator
  DQL47_RS10190 (NCTC12090_02065) spo0J 2127260..2128033 (+) 774 WP_111690534.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 42419.98 Da        Isoelectric Point: 5.4809

>NTDB_id=1136773 DQL47_RS10185 WP_043039587.1 2125917..2127140(+) (htrA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MLKSKNIVKPLWVLAIGFLGGLLAALVVNGFSQNSLTSSNAKGATTTSNVSFNNTTDTTKAVKVVQDAVVSVINYQKAAS
PAISNPYINLFGEENDTSAVQKEDELSIHSEGSGVVYKKEGNTAYLVTNNHVIEGAQRIEILTADGSKIVGELVGADTYS
DLAVVKVAADKIKTIAKFADSTKINVGEVAIAIGSPLGTKYANSVTEGIVSSLSRTVTSRNEAGETISTNAIQTDAAINP
GNSGGPLINIEGQVIGINSSKISSTPTGSGGAIEGIGFAIPSSDVVTIINQLESNGAVIRPALGITMVNLSNLSTNALIQ
LNIPTSVTSGVVVASTQDGMPALGKLEQYDVITEVDGKEVSSISDLQSVLYSHEINDTIKVTFYRGTAKKKVDIKLTKTT
KDLTKKQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1136773 DQL47_RS10185 WP_043039587.1 2125917..2127140(+) (htrA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
GTGTTAAAATCAAAAAATATAGTGAAACCCTTATGGGTTTTAGCCATTGGATTTTTAGGGGGCTTATTAGCTGCCTTAGT
TGTTAATGGATTTAGTCAGAATTCTCTAACATCTTCAAATGCAAAGGGAGCAACGACAACAAGCAACGTCAGCTTTAATA
ATACAACTGATACAACAAAGGCTGTTAAGGTGGTTCAAGATGCTGTAGTGTCTGTTATTAACTATCAAAAGGCTGCTTCG
CCTGCCATTTCAAATCCTTACATCAATCTTTTCGGAGAAGAAAATGATACCTCAGCAGTACAAAAAGAGGACGAGCTAAG
CATACACAGTGAAGGCTCGGGTGTTGTCTACAAAAAAGAAGGAAATACTGCTTATCTTGTAACCAATAATCATGTCATTG
AGGGAGCTCAACGAATTGAAATTTTAACAGCAGACGGCTCTAAGATCGTTGGAGAACTAGTTGGTGCAGACACTTATTCT
GACCTAGCTGTTGTCAAAGTTGCTGCTGATAAAATCAAAACAATAGCCAAATTTGCAGATTCAACCAAAATTAATGTTGG
AGAGGTAGCCATTGCAATTGGTAGTCCTCTTGGAACAAAATATGCCAACTCAGTGACAGAAGGGATTGTTTCAAGTCTAA
GCCGTACAGTCACTTCAAGAAATGAAGCAGGTGAGACCATCTCAACAAATGCTATCCAAACTGATGCTGCTATCAATCCA
GGTAATTCAGGTGGACCACTCATCAATATTGAAGGCCAGGTTATTGGTATCAACTCAAGTAAAATATCCTCAACACCTAC
TGGTAGCGGCGGAGCCATTGAGGGAATTGGCTTTGCTATTCCATCAAGCGATGTTGTCACCATTATTAACCAACTAGAGT
CTAACGGAGCTGTTATCAGACCAGCCTTAGGCATTACAATGGTAAACTTAAGTAATCTATCAACCAATGCATTGATTCAA
TTGAATATTCCAACAAGCGTTACCAGCGGTGTTGTCGTAGCCTCTACTCAAGATGGCATGCCTGCTCTTGGTAAATTGGA
GCAGTATGATGTCATTACTGAGGTTGACGGTAAAGAAGTCAGCTCAATTAGTGACCTACAAAGTGTCTTATATAGTCATG
AGATTAACGACACCATTAAGGTAACCTTCTACAGAGGAACTGCTAAGAAGAAAGTTGACATCAAATTAACAAAAACAACT
AAGGATCTAACTAAAAAGCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.809

97.789

0.604

  htrA Streptococcus gordonii str. Challis substr. CH1

57.606

98.526

0.568

  htrA Streptococcus mitis NCTC 12261

55.076

96.806

0.533

  htrA Streptococcus pneumoniae Rx1

53.634

98.034

0.526

  htrA Streptococcus pneumoniae D39

53.634

98.034

0.526

  htrA Streptococcus pneumoniae R6

53.634

98.034

0.526

  htrA Streptococcus pneumoniae TIGR4

53.634

98.034

0.526


Multiple sequence alignment