Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D934_RS03215 Genome accession   NZ_CP006696
Coordinates   753480..755000 (+) Length   506 a.a.
NCBI ID   WP_020852434.1    Uniprot ID   A0A060H2Q2
Organism   Xylella fastidiosa subsp. sandyi Ann-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 748480..760000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D934_RS03185 (D934_03420) rpsM 749302..749658 (+) 357 WP_004090134.1 30S ribosomal protein S13 -
  D934_RS03190 (D934_03425) rpsK 749674..750066 (+) 393 WP_004090135.1 30S ribosomal protein S11 -
  D934_RS03195 (D934_03430) rpsD 750081..750707 (+) 627 WP_020852430.1 30S ribosomal protein S4 -
  D934_RS03200 (D934_03435) rpoA 750762..751760 (+) 999 WP_020852431.1 DNA-directed RNA polymerase subunit alpha -
  D934_RS03205 (D934_03440) rplQ 751892..752272 (+) 381 WP_020852432.1 50S ribosomal protein L17 -
  D934_RS03210 (D934_03445) - 753209..753469 (+) 261 WP_004086547.1 accessory factor UbiK family protein -
  D934_RS03215 (D934_03450) comM 753480..755000 (+) 1521 WP_020852434.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D934_RS14670 (D934_03455) - 756196..756342 (+) 147 WP_020852435.1 hypothetical protein -
  D934_RS03220 (D934_03460) - 757349..758482 (+) 1134 WP_012382466.1 triacylglycerol lipase -
  D934_RS03225 (D934_03465) - 758483..759535 (+) 1053 WP_020852437.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54457.60 Da        Isoelectric Point: 8.0400

>NTDB_id=113575 D934_RS03215 WP_020852434.1 753480..755000(+) (comM) [Xylella fastidiosa subsp. sandyi Ann-1]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASQAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLLAAQRFEVKADVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGVQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGCCQCGLDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDSRALQYNRQAGLNAHLGQAATERHCCLDATDQRLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTAFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=113575 D934_RS03215 WP_020852434.1 753480..755000(+) (comM) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCCCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGCCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGCGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGCGGTCAATTGCCACTCGATGCTTTAGCAGGTAAGGAGTTCCT
CGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCACAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGCACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGCTGGCTGCTCAGAGATTCGAAGTTAAGGCTGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAGGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGTGGTAAAACTCTTTTAGCCTCAAGATTGCCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGTGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGTACAGGCACGTCCTGGTGAGATCTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGCAAAACCTTGGAAGCCTTACGTGAACCCATG
GAATCTGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTAGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGATGTTGTCAATGTGGTTTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCGTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCGCCGCAGCTACTGCGTCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTTACTGATTCCAGGGCTTTGCAATATAATCGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGCGACCGACCAGCGGTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGCGTGGCACGCACGATTGCTGATTTGGATGGT
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTTGACCGTACAGCCTTTGGCATTGCTTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060H2Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.6

98.814

0.53
  comM Vibrio campbellii strain DS40M4

53.4

98.814

0.528
  comM Haemophilus influenzae Rd KW20

52.079

99.802

0.52
  comM Glaesserella parasuis strain SC1401

51.779

100

0.518
  comM Legionella pneumophila str. Paris

50

98.814

0.494
  comM Legionella pneumophila strain ERS1305867

50

98.814

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.301

100

0.441

Multiple sequence alignment