Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DQL80_RS04275 | Genome accession | NZ_LS483302 |
| Coordinates | 854242..854712 (+) | Length | 156 a.a. |
| NCBI ID | WP_111680167.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NCTC8726 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 842827..885480 | 854242..854712 | within | 0 |
Gene organization within MGE regions
Location: 842827..885480
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL80_RS04195 (NCTC8726_00792) | sufB | 842827..844224 (+) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| DQL80_RS04200 (NCTC8726_00793) | - | 844292..845341 (-) | 1050 | WP_111680166.1 | tyrosine-type recombinase/integrase | - |
| DQL80_RS04205 (NCTC8726_00794) | - | 845403..846644 (-) | 1242 | WP_031923531.1 | SAP domain-containing protein | - |
| DQL80_RS04210 (NCTC8726_00795) | - | 846689..847363 (-) | 675 | WP_031916497.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DQL80_RS04215 (NCTC8726_00796) | - | 847380..847712 (-) | 333 | WP_001055142.1 | helix-turn-helix domain-containing protein | - |
| DQL80_RS04220 (NCTC8726_00797) | - | 847974..848168 (+) | 195 | WP_031916498.1 | helix-turn-helix domain-containing protein | - |
| DQL80_RS04225 (NCTC8726_00798) | - | 848177..848941 (+) | 765 | WP_111680717.1 | phage antirepressor | - |
| DQL80_RS04230 (NCTC8726_00799) | tscA | 848942..849166 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| DQL80_RS04235 (NCTC8726_00800) | - | 849206..849655 (+) | 450 | WP_000993183.1 | hypothetical protein | - |
| DQL80_RS04240 (NCTC8726_00801) | - | 849669..849890 (+) | 222 | WP_031923535.1 | hypothetical protein | - |
| DQL80_RS04245 (NCTC8726_00802) | - | 849883..850044 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| DQL80_RS04250 (NCTC8726_00803) | - | 850137..850397 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| DQL80_RS04255 (NCTC8726_00804) | - | 850406..850669 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| DQL80_RS04260 (NCTC8726_00805) | - | 850666..852621 (+) | 1956 | WP_172452437.1 | AAA family ATPase | - |
| DQL80_RS04265 (NCTC8726_00806) | - | 852623..853543 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| DQL80_RS04270 (NCTC8726_00807) | - | 853624..854241 (+) | 618 | WP_078092708.1 | MBL fold metallo-hydrolase | - |
| DQL80_RS04275 (NCTC8726_00808) | ssbA | 854242..854712 (+) | 471 | WP_111680167.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL80_RS04280 (NCTC8726_00809) | - | 854742..855626 (+) | 885 | WP_111680168.1 | DnaD domain protein | - |
| DQL80_RS04285 (NCTC8726_00810) | - | 855633..855851 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| DQL80_RS04290 (NCTC8726_00811) | - | 855860..856264 (+) | 405 | WP_000401971.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DQL80_RS04295 (NCTC8726_00812) | - | 856277..856648 (+) | 372 | WP_031795767.1 | SA1788 family PVL leukocidin-associated protein | - |
| DQL80_RS04300 (NCTC8726_00813) | - | 856649..856897 (+) | 249 | WP_111680169.1 | phi PVL orf 51-like protein | - |
| DQL80_RS04305 (NCTC8726_00814) | - | 856938..857186 (+) | 249 | WP_031889594.1 | DUF1024 family protein | - |
| DQL80_RS04310 (NCTC8726_00815) | - | 857179..857688 (+) | 510 | WP_111680170.1 | dUTP diphosphatase | - |
| DQL80_RS04315 (NCTC8726_00816) | - | 857725..857970 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| DQL80_RS04320 (NCTC8726_00817) | - | 857967..858155 (+) | 189 | WP_000195782.1 | DUF1381 domain-containing protein | - |
| DQL80_RS04325 (NCTC8726_00818) | - | 858130..858330 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| DQL80_RS04330 (NCTC8726_00819) | rinB | 858333..858506 (+) | 174 | WP_172452438.1 | transcriptional activator RinB | - |
| DQL80_RS04335 (NCTC8726_00820) | - | 858507..858872 (+) | 366 | WP_072467781.1 | hypothetical protein | - |
| DQL80_RS04340 (NCTC8726_00821) | - | 858873..859019 (+) | 147 | WP_000990005.1 | hypothetical protein | - |
| DQL80_RS04345 (NCTC8726_00822) | - | 859043..859465 (+) | 423 | WP_000162701.1 | RinA family phage transcriptional activator | - |
| DQL80_RS04350 (NCTC8726_00823) | - | 859796..860290 (+) | 495 | WP_000594088.1 | terminase small subunit | - |
| DQL80_RS04355 (NCTC8726_00824) | - | 860283..861506 (+) | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| DQL80_RS04360 (NCTC8726_00825) | - | 861503..862927 (+) | 1425 | WP_031784361.1 | phage portal protein | - |
| DQL80_RS04365 (NCTC8726_00826) | - | 862896..863849 (+) | 954 | WP_111680172.1 | phage head morphogenesis protein | - |
| DQL80_RS04370 (NCTC8726_00827) | - | 863851..864057 (+) | 207 | WP_000346032.1 | hypothetical protein | - |
| DQL80_RS04375 (NCTC8726_00828) | - | 864160..864744 (+) | 585 | WP_111680173.1 | DUF4355 domain-containing protein | - |
| DQL80_RS04380 (NCTC8726_00829) | - | 864761..865675 (+) | 915 | WP_000235168.1 | phage major capsid protein | - |
| DQL80_RS14105 (NCTC8726_00830) | - | 865687..865830 (+) | 144 | WP_000002931.1 | hypothetical protein | - |
| DQL80_RS04385 (NCTC8726_00831) | - | 865836..866186 (+) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| DQL80_RS04390 (NCTC8726_00832) | - | 866198..866533 (+) | 336 | WP_000483041.1 | phage head closure protein | - |
| DQL80_RS04395 (NCTC8726_00833) | - | 866520..866927 (+) | 408 | WP_111680174.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| DQL80_RS04400 (NCTC8726_00834) | - | 866940..867365 (+) | 426 | WP_000270190.1 | DUF3168 domain-containing protein | - |
| DQL80_RS04405 (NCTC8726_00835) | - | 867366..867923 (+) | 558 | WP_000057582.1 | tail protein | - |
| DQL80_RS04410 (NCTC8726_00836) | - | 867990..868496 (+) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| DQL80_RS04415 (NCTC8726_00837) | - | 868541..868825 (+) | 285 | WP_000880587.1 | hypothetical protein | - |
| DQL80_RS04420 (NCTC8726_00838) | - | 868829..871714 (+) | 2886 | WP_111680175.1 | terminase | - |
| DQL80_RS04425 (NCTC8726_00839) | - | 871729..872670 (+) | 942 | WP_111680176.1 | phage tail domain-containing protein | - |
| DQL80_RS04430 (NCTC8726_00840) | - | 872681..874567 (+) | 1887 | WP_001604154.1 | SGNH/GDSL hydrolase family protein | - |
| DQL80_RS04435 (NCTC8726_00841) | - | 874580..876478 (+) | 1899 | WP_111680177.1 | hypothetical protein | - |
| DQL80_RS04440 (NCTC8726_00842) | - | 876478..878301 (+) | 1824 | WP_111680178.1 | phage baseplate upper protein | - |
| DQL80_RS04445 (NCTC8726_00843) | - | 878301..878678 (+) | 378 | WP_000705919.1 | DUF2977 domain-containing protein | - |
| DQL80_RS04450 (NCTC8726_00844) | - | 878688..878861 (+) | 174 | WP_015990323.1 | XkdX family protein | - |
| DQL80_RS04455 (NCTC8726_00845) | - | 878902..879201 (+) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| DQL80_RS04460 (NCTC8726_00846) | - | 879338..881212 (+) | 1875 | WP_111680179.1 | glucosaminidase domain-containing protein | - |
| DQL80_RS04465 (NCTC8726_00847) | - | 881225..882397 (+) | 1173 | WP_111680180.1 | BppU family phage baseplate upper protein | - |
| DQL80_RS04470 (NCTC8726_00848) | - | 882403..882798 (+) | 396 | WP_015978410.1 | hypothetical protein | - |
| DQL80_RS04475 (NCTC8726_00849) | - | 882854..883291 (+) | 438 | WP_111680181.1 | phage holin | - |
| DQL80_RS04480 (NCTC8726_00850) | - | 883272..884717 (+) | 1446 | WP_001148115.1 | SH3 domain-containing protein | - |
| DQL80_RS04485 (NCTC8726_00851) | - | 884960..885112 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| DQL80_RS04490 (NCTC8726_00852) | - | 885183..885293 (+) | 111 | WP_000139425.1 | hypothetical protein | - |
| DQL80_RS04495 (NCTC8726_00853) | - | 885295..885480 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17603.51 Da Isoelectric Point: 5.2672
>NTDB_id=1135588 DQL80_RS04275 WP_111680167.1 854242..854712(+) (ssbA) [Staphylococcus aureus strain NCTC8726]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1135588 DQL80_RS04275 WP_111680167.1 854242..854712(+) (ssbA) [Staphylococcus aureus strain NCTC8726]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.192 |
100 |
0.66 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
67.949 |
0.41 |
| ssb | Glaesserella parasuis strain SC1401 |
33.333 |
100 |
0.378 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |