Detailed information NTG1135063

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: QI0055_RS14040
• Genome accession: NZ_LR999860
• Coordinates: 2763803..2764285 (-)
• Length: 160 a.a.
• NCBI ID: WP_061671720.1
• Uniprot ID: -
• Organism: Listeria monocytogenes isolate QI0055
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2758803..2769285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QI0055_RS14000 (QI0055_2759)	-	2759419..2760738 (-)	1320	WP_003734912.1	PBSX family phage terminase large subunit	-
QI0055_RS14005 (QI0055_2760)	terS	2760731..2761471 (-)	741	WP_061671719.1	phage terminase small subunit	-
QI0055_RS14010 (QI0055_2761)	-	2761511..2761738 (-)	228	WP_003725074.1	hypothetical protein	-
QI0055_RS14015 (QI0055_2762)	-	2761999..2762571 (-)	573	WP_003734998.1	sigma-70 family RNA polymerase sigma factor	-
QI0055_RS14020 (QI0055_2763)	-	2762661..2762816 (-)	156	WP_003734997.1	hypothetical protein	-
QI0055_RS14025 (QI0055_2764)	-	2762857..2763240 (-)	384	WP_003734996.1	DUF2481 family protein	-
QI0055_RS14030 (QI0055_2765)	-	2763244..2763648 (-)	405	WP_003734995.1	DUF1064 domain-containing protein	-
QI0055_RS14035 (QI0055_2766)	-	2763593..2763784 (-)	192	WP_003734994.1	hypothetical protein	-
QI0055_RS14040 (QI0055_2767)	ssbA	2763803..2764285 (-)	483	WP_061671720.1	single-stranded DNA-binding protein	Machinery gene
QI0055_RS14045 (QI0055_2768)	-	2764285..2764686 (-)	402	WP_003743377.1	hypothetical protein	-
QI0055_RS14050 (QI0055_2769)	-	2764697..2764924 (-)	228	WP_003743375.1	ASCH/PUA domain-containing protein	-
QI0055_RS14055 (QI0055_2770)	-	2764925..2765110 (-)	186	WP_003743374.1	hypothetical protein	-
QI0055_RS14060 (QI0055_2771)	-	2765110..2765400 (-)	291	WP_061691215.1	hypothetical protein	-
QI0055_RS14065 (QI0055_2772)	-	2765397..2765582 (-)	186	WP_003727764.1	hypothetical protein	-
QI0055_RS14070 (QI0055_2773)	-	2765579..2765971 (-)	393	WP_061092564.1	YopX family protein	-
QI0055_RS14075 (QI0055_2774)	-	2766098..2766619 (-)	522	WP_031644380.1	YopX family protein	-
QI0055_RS14080 (QI0055_2775)	-	2766616..2767248 (-)	633	WP_003734948.1	DUF1642 domain-containing protein	-
QI0055_RS14085 (QI0055_2776)	-	2767245..2768057 (-)	813	WP_003734949.1	DNA adenine methylase	-
QI0055_RS14090 (QI0055_2777)	-	2768054..2769034 (-)	981	WP_003734950.1	phage replisome organizer N-terminal domain-containing protein	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17730.52 Da
• Isoelectric Point: 4.9725

>NTDB_id=1135063 QI0055_RS14040 WP_061671720.1 2763803..2764285(-) (ssbA) [Listeria monocytogenes isolate QI0055]
MMNRVVLVGRLTKDPELRYTPAGLAVATFTLAVNRAFTNQNGEREADFIQCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNAEGATSNNYQSGSNYSNNNQTSSYRADTSQKSDSFANEGKPIDINPDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=1135063 QI0055_RS14040 WP_061671720.1 2763803..2764285(-) (ssbA) [Listeria monocytogenes isolate QI0055]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGATTAGCTGTTGC
GACTTTTACATTAGCTGTAAACCGCGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAATGTTGCTAATTTCTTGAAAAAAGGAAGCTTGGCAGGCGTCGATGGACGCATACAGACTCGA
AATTATGAGGATAACGACGGTAAACGCGTTTTTGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
TAACAACGCAGAAGGCGCTACATCGAATAATTACCAAAGTGGGTCTAATTATTCAAATAACAACCAAACAAGCTCATATC
GAGCTGATACGAGCCAGAAGAGCGATTCATTTGCAAACGAGGGTAAACCGATAGATATTAATCCGGATGATTTACCATTT
TGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	66.86	100	0.719
ssb	Latilactobacillus sakei subsp. sakei 23K	55.294	100	0.587
ssbB	Bacillus subtilis subsp. subtilis str. 168	63.208	66.25	0.419
ssb	Neisseria meningitidis MC58	34.104	100	0.369
ssb	Neisseria gonorrhoeae MS11	33.526	100	0.362