Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACLQZX_RS16595 Genome accession   NZ_LR962898
Coordinates   3827186..3828580 (+) Length   464 a.a.
NCBI ID   WP_211914178.1    Uniprot ID   -
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3829134..3846087 3827186..3828580 flank 554


Gene organization within MGE regions


Location: 3827186..3846087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQZX_RS16595 (X12_003299) pilR 3827186..3828580 (+) 1395 WP_211914178.1 sigma-54-dependent transcriptional regulator Regulator
  ACLQZX_RS16600 (X12_003300) - 3828778..3829134 (+) 357 WP_211914179.1 hypothetical protein -
  ACLQZX_RS16605 (X12_003301) - 3829134..3829871 (+) 738 WP_244860030.1 zeta toxin family protein -
  ACLQZX_RS16610 (X12_003302) pilB 3830055..3831782 (-) 1728 WP_211914180.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLQZX_RS16615 (X12_003303) - 3831929..3832390 (-) 462 WP_411757862.1 pilin -
  ACLQZX_RS16620 (X12_003304) comP 3832470..3832892 (-) 423 WP_211914181.1 pilin Machinery gene
  ACLQZX_RS16625 (X12_003305) pilC 3833326..3834483 (+) 1158 WP_386051418.1 type II secretion system F family protein Machinery gene
  ACLQZX_RS16630 (X12_003306) - 3834490..3835353 (+) 864 WP_002812278.1 prepilin peptidase -
  ACLQZX_RS16635 (X12_003307) coaE 3835367..3835978 (+) 612 WP_211914182.1 dephospho-CoA kinase -
  ACLQZX_RS16640 - 3836141..3840499 (+) 4359 WP_244860031.1 RHS repeat-associated core domain-containing protein -
  ACLQZX_RS16645 (X12_003309) - 3840502..3840960 (+) 459 WP_211914183.1 hypothetical protein -
  ACLQZX_RS16650 (X12_003310) - 3841359..3841760 (+) 402 WP_211914184.1 SymE family type I addiction module toxin -
  ACLQZX_RS16655 (X12_003311) - 3841905..3842210 (+) 306 WP_211914185.1 helix-turn-helix transcriptional regulator -
  ACLQZX_RS16660 (X12_003312) - 3842218..3843447 (+) 1230 WP_211914186.1 type II toxin-antitoxin system HipA family toxin -
  ACLQZX_RS16665 (X12_003313) - 3843581..3844915 (-) 1335 WP_211914187.1 sensor histidine kinase -
  ACLQZX_RS16670 (X12_003314) - 3844908..3845585 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACLQZX_RS16675 (X12_003315) - 3845617..3846087 (-) 471 WP_244860033.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50199.58 Da        Isoelectric Point: 6.4414

>NTDB_id=1134969 ACLQZX_RS16595 WP_211914178.1 3827186..3828580(+) (pilR) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSGAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1134969 ACLQZX_RS16595 WP_211914178.1 3827186..3828580(+) (pilR) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1514]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTCCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCCAAGCACTACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAACACGCGCTGGAATTGAACAACCGCGACCGCCCCGCGCCACCCGCCCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCGGCGCGATGGAGGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAATTGGTCGCGCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGCCCGTTCGTCCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAATTACCGCTGCAGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCACCGAATCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGGCGACCTGGTCTCCGACGGTCGCT
TCCGTCATGACCTGTATTACCGCATCAACGTGATCGAACTGCGCGTCCCGCCCCTGCGCGAACGCAGCGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCACGCAGCCATGGCCGCCCGATTCCGCTACTGACCCAATCCGCACTCGA
CGCGCTGGACACATACGGCTTCCCCGGTAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCCTCCGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCCCTGGAAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGAGCGC
TGCGTTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.478

99.138

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment