Detailed information NTG1134951

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACLVWI_RS16530
• Genome accession: NZ_LR962897
• Coordinates: 3835108..3836496 (+)
• Length: 462 a.a.
• NCBI ID: WP_411862066.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1586
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3830108..3841496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLVWI_RS16515 (X12_003295)	sucD	3831001..3831876 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
ACLVWI_RS16520 (X12_003296)	sucC	3831901..3833070 (-)	1170	WP_039519379.1	ADP-forming succinate--CoA ligase subunit beta	-
ACLVWI_RS16525 (X12_003297)	-	3833302..3834915 (+)	1614	WP_411862065.1	sensor histidine kinase	-
ACLVWI_RS16530 (X12_003298)	pilR	3835108..3836496 (+)	1389	WP_411862066.1	sigma-54-dependent transcriptional regulator	Regulator
ACLVWI_RS16535 (X12_003299)	pilB	3837883..3839592 (-)	1710	WP_411863116.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACLVWI_RS16540 (X12_003300)	-	3839665..3840177 (-)	513	WP_411862067.1	pilin	-
ACLVWI_RS16545 (X12_003301)	pilA/pilAI	3840181..3840609 (-)	429	WP_230433800.1	pilin	Machinery gene

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50010.37 Da
• Isoelectric Point: 6.5112

>NTDB_id=1134951 ACLVWI_RS16530 WP_411862066.1 3835108..3836496(+) (pilR) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1586]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPEQASRLLGDSSAMESLRATIGKVARSQ
APVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDEV
AELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLPQL
AAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAAVE
PREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=1134951 ACLVWI_RS16530 WP_411862066.1 3835108..3836496(+) (pilR) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1586]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGTGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAACCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAATAACCGCGACCGCCCCGCCCCGCCACCACCGG
AACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGTAGCCAG
GCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAAGGCGCACGCGC
AGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGACGAAGTG
GCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCAGTGCGCCCGGTGGGCGCGTCCAG
CGAGTCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTTTCCGCC
ACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCGCAACTG
GCCGCGGCGATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGACGCGCT
GGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATATTAGAACGCGCCCTGGCCCTGGCCGAAGACGACC
AGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACTCCCGGCAGCGCCGCCGTCGAA
CCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAGCGCGCCGCGAT
CCAGAAGGCACTCGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGCATCACGTTTCGGGCGTTGCGTT
ATAAATTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.341	99.784	0.632
pilR	Acinetobacter baumannii strain A118	49.138	100	0.494