Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JMX15_RS24010 | Genome accession | NZ_LR890657 |
| Coordinates | 5014966..5015496 (-) | Length | 176 a.a. |
| NCBI ID | WP_004936793.1 | Uniprot ID | A0AAW6X7L8 |
| Organism | Serratia marcescens strain MSB1_9C isolate MSB1_9C | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4987950..5015496 | 5014966..5015496 | within | 0 |
Gene organization within MGE regions
Location: 4987950..5015496
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX15_RS23890 | - | 4987950..4988987 (-) | 1038 | WP_236582461.1 | IS5 family transposase | - |
| JMX15_RS23895 | - | 4989667..4989876 (-) | 210 | WP_201621408.1 | hypothetical protein | - |
| JMX15_RS23900 | - | 4990066..4991097 (-) | 1032 | WP_001395480.1 | IS630-like element ISEc33 family transposase | - |
| JMX15_RS23905 | - | 4991194..4993422 (-) | 2229 | WP_201621409.1 | DEAD/DEAH box helicase | - |
| JMX15_RS23910 | - | 4993536..4994420 (-) | 885 | WP_074193854.1 | hypothetical protein | - |
| JMX15_RS23915 | - | 4994632..4995211 (+) | 580 | Protein_4688 | transposase | - |
| JMX15_RS23920 | - | 4995306..4996534 (+) | 1229 | WP_110129298.1 | IS3-like element ISEc36 family transposase | - |
| JMX15_RS23925 | - | 4996554..4997066 (+) | 513 | Protein_4690 | IS3 family transposase | - |
| JMX15_RS23930 | - | 4997189..4997434 (-) | 246 | WP_044652526.1 | hypothetical protein | - |
| JMX15_RS23935 | - | 4997552..4998583 (+) | 1032 | WP_001395480.1 | IS630-like element ISEc33 family transposase | - |
| JMX15_RS23940 | - | 4999240..5000604 (-) | 1365 | WP_154935777.1 | anti-phage deoxyguanosine triphosphatase | - |
| JMX15_RS23945 | - | 5001029..5001697 (+) | 669 | WP_064388574.1 | DNA adenine methylase | - |
| JMX15_RS23950 | - | 5001694..5002539 (+) | 846 | WP_044650562.1 | 8-oxoguanine DNA glycosylase | - |
| JMX15_RS23955 | - | 5002483..5003157 (-) | 675 | WP_223371151.1 | dehydrogenase | - |
| JMX15_RS23960 | - | 5003135..5003740 (-) | 606 | WP_046877730.1 | 7-cyano-7-deazaguanine synthase | - |
| JMX15_RS23965 | - | 5003737..5004978 (-) | 1242 | WP_077257501.1 | PfkB family carbohydrate kinase | - |
| JMX15_RS23970 | - | 5004975..5005307 (-) | 333 | WP_044650496.1 | hypothetical protein | - |
| JMX15_RS23975 | - | 5005962..5008364 (-) | 2403 | WP_064388572.1 | AAA family ATPase | - |
| JMX15_RS23980 | - | 5008551..5008955 (-) | 405 | WP_046877732.1 | hypothetical protein | - |
| JMX15_RS23985 | - | 5008948..5009727 (-) | 780 | WP_201621410.1 | hypothetical protein | - |
| JMX15_RS23990 | - | 5009707..5010675 (+) | 969 | WP_077254959.1 | IS5-like element IS903B family transposase | - |
| JMX15_RS23995 | - | 5010701..5012038 (-) | 1338 | WP_201621411.1 | hypothetical protein | - |
| JMX15_RS24000 | - | 5012038..5013582 (-) | 1545 | WP_064388571.1 | site-specific integrase | - |
| JMX15_RS24005 | - | 5013575..5014822 (-) | 1248 | WP_057992044.1 | site-specific integrase | - |
| JMX15_RS24010 | ssb | 5014966..5015496 (-) | 531 | WP_004936793.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18808.71 Da Isoelectric Point: 5.2358
>NTDB_id=1134558 JMX15_RS24010 WP_004936793.1 5014966..5015496(-) (ssb) [Serratia marcescens strain MSB1_9C isolate MSB1_9C]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=1134558 JMX15_RS24010 WP_004936793.1 5014966..5015496(-) (ssb) [Serratia marcescens strain MSB1_9C isolate MSB1_9C]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.243 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
59.14 |
100 |
0.625 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.158 |
100 |
0.364 |