Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H7A87_RS18795 Genome accession   NZ_LR861805
Coordinates   4435591..4437111 (+) Length   506 a.a.
NCBI ID   WP_119129780.1    Uniprot ID   -
Organism   Xanthomonas sp. CPBF 426 isolate     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4430591..4442111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A87_RS18770 (XSP_003769) - 4431335..4431505 (-) 171 WP_180496796.1 hypothetical protein -
  H7A87_RS18775 (XSP_003770) - 4431787..4432443 (+) 657 WP_164739214.1 RIO1 family regulatory kinase/ATPase -
  H7A87_RS18780 (XSP_003771) - 4432598..4434577 (-) 1980 WP_119129778.1 beta-N-acetylglucosaminidase domain-containing protein -
  H7A87_RS18785 (XSP_003772) - 4434779..4435117 (-) 339 WP_016904463.1 P-II family nitrogen regulator -
  H7A87_RS18790 (XSP_003773) - 4435309..4435575 (+) 267 WP_119129779.1 accessory factor UbiK family protein -
  H7A87_RS18795 (XSP_003774) comM 4435591..4437111 (+) 1521 WP_119129780.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H7A87_RS18800 (XSP_003775) - 4437384..4437893 (+) 510 WP_161960161.1 lipocalin family protein -
  H7A87_RS18805 (XSP_003776) - 4438519..4438695 (-) 177 WP_010374782.1 hypothetical protein -
  H7A87_RS18810 (XSP_003777) - 4439079..4440638 (+) 1560 WP_119129783.1 EAL domain-containing protein -
  H7A87_RS18815 (XSP_003778) - 4440885..4442009 (-) 1125 WP_104584885.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53895.46 Da        Isoelectric Point: 7.9807

>NTDB_id=1132465 H7A87_RS18795 WP_119129780.1 4435591..4437111(+) (comM) [Xanthomonas sp. CPBF 426 isolate]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQTLADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCAALNGSQRAPAAEVAVPALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPESSE
AEALETAAITSVSGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHHGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVDVPRLPPHALRSSN
PGEDSASVRTRVVAARERQLARAGTPNAQLDQAQTDHHCHLQGDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
AIATRHLTEAIGYRKLDRAVETASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1132465 H7A87_RS18795 WP_119129780.1 4435591..4437111(+) (comM) [Xanthomonas sp. CPBF 426 isolate]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCACCTGAAGTTCGGGTGGAAGTGCACTTGTCCGG
CGGGCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCTGCGGTACGCGAATCGCGCGAACGCGTGCGCGCGGCGCTGC
TGTGTGCGCAGTTCGAATTTCCCGCCCGGCGCATCACCATCAACCTGGCCCCGGCCGACTTGCCGAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCCCTCGGCATCCTGGCCGCCAGCGGCCAGATCGATCGCCAAACCCTGGCCGATTACGAGTTTCT
CGGCGAGCTCGCGCTGACCGGCGAATTACGTGGCGTCGATGGAGTACTGCCGGCCGCCCTGGCCGCCGCGCAGGCCGGCA
GACGGCTGATCGTGCCGCTGGCCAACGGCGCCGAAGCGGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGCGCCGCGCTCAACGGCAGCCAACGGGCACCGGCCGCCGAGGTGGCGGTGCCGGCGCTCGGCGCGCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGCCAGCCGCATGCGCGTCGCGCGCTGGAGATCGCCGCCGCCGGCGGCCATCATC
TGCTGCTGGTCGGCAGCCCCGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCAGCCTGTTGCCCGAATCCAGCGAA
GCCGAGGCACTGGAAACCGCTGCCATCACCTCGGTCAGCGGCCGCGGGCTGGATCTTGCGCGCTGGCGGCAGCGGCCTTA
CCGGGCCCCGCACCACACCGCCAGCGCGGTCGCGTTGGTCGGTGGTGGCACCCATCCGCGTCCCGGCGAGATCTCGCTGG
CCCATCACGGCGTGCTGTTTCTGGACGAGCTCCCGGAGTGGCAGCGGCAGACGCTGGAAGTGTTGCGCGAGCCCCTGGAA
TCGGGGCTGGTGACGATTTCGCGCGCAGCGCGCAGCGTGGATTTCCCGGCGCGGTTCCAACTGGTTGCTGCCATGAACCC
GTGTCCGTGCGGATGGGCCGGCGACGGCAGCGGGCGGTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGTCCGTTGCTGGACCGGATCGATCTGCATGTCGACGTGCCGCGACTGCCACCGCATGCCTTGCGCAGCAGCAAT
CCCGGCGAAGACAGCGCCAGCGTGCGTACACGCGTGGTCGCCGCACGCGAACGGCAACTCGCGCGTGCCGGCACACCCAA
CGCACAACTGGATCAGGCACAGACCGATCATCATTGCCACCTGCAGGGCGACGATCAGGTGCTGCTGGAACGCGCCATCG
AACACCTGCAGCTCTCCGCGCGCTCGATGCATCGCATCCTGCGCGTGGCTCGCACCATCGCCGATCTCGACGACAGTGCA
GCCATTGCCACCCGGCATCTGACCGAGGCCATCGGCTACCGCAAACTGGATCGTGCGGTGGAGACGGCGAGCGCGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

54.599

100

0.551
  comM Glaesserella parasuis strain SC1401

53.74

100

0.54
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

52.113

98.221

0.512
  comM Legionella pneumophila strain ERS1305867

52.113

98.221

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.26

100

0.464

Multiple sequence alignment