Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CFBP498_RS20080 Genome accession   NZ_LR828253
Coordinates   4652483..4654003 (+) Length   506 a.a.
NCBI ID   WP_006448998.1    Uniprot ID   A0A6V7EX92
Organism   Xanthomonas hortorum pv. gardneri strain CFBP 8129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4647483..4659003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP498_RS20060 (CFBP8129_40680) - 4648235..4648909 (+) 675 WP_006448994.1 RIO1 family regulatory kinase/ATPase -
  CFBP498_RS20065 (CFBP8129_40690) - 4649260..4651233 (-) 1974 WP_006448995.1 beta-N-acetylhexosaminidase family protein -
  CFBP498_RS20070 (CFBP8129_40700) - 4651660..4652034 (-) 375 WP_197970279.1 P-II family nitrogen regulator -
  CFBP498_RS20075 (CFBP8129_40710) ubiK 4652188..4652466 (+) 279 WP_043907433.1 ubiquinone biosynthesis accessory factor UbiK -
  CFBP498_RS20080 (CFBP8129_40720) comM 4652483..4654003 (+) 1521 WP_006448998.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CFBP498_RS20085 (CFBP8129_40730) - 4654093..4654602 (+) 510 WP_193748352.1 lipocalin family protein -
  CFBP498_RS20090 (CFBP8129_40740) - 4655140..4655316 (-) 177 WP_006449000.1 hypothetical protein -
  CFBP498_RS20095 (CFBP8129_40750) - 4655701..4657263 (+) 1563 WP_006449001.1 EAL domain-containing protein -
  CFBP498_RS20100 (CFBP8129_40760) - 4657516..4658640 (-) 1125 WP_006449002.1 fatty acid desaturase family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53842.65 Da        Isoelectric Point: 8.1604

>NTDB_id=1132395 CFBP498_RS20080 WP_006448998.1 4652483..4654003(+) (comM) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAGSGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGTQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGSHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDTIVRYRSRISGPLLDRIDLHVEVPRLPPQALRNGN
VGEDSASVRTRVVAARVLQLARAGVPNAQLDQAQTDHHCRLRNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATHHLTEAIGYRKLDRAVGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1132395 CFBP498_RS20080 WP_006448998.1 4652483..4654003(+) (comM) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTAGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAGTCGCGCGAACGCGTGCGTGCCGCGCTGC
TGTGCGCACAGTTCGAATTCCCCGCGCGGCGCATCACCATCAATCTGGCGCCGGCCGATTTGCCCAAGGAAGGCGGCCGT
TTCGATCTGCCGATCGCACTCGGCATCCTGGCCGGCAGCGGGCAGATCGACCGGCAGGCCCTGGCCGAGTACGAATTTCT
CGGCGAACTCGCCCTCACCGGCGAATTGCGCGGTGTCGATGGCGTGCTGCCCGCCGCCCTGGCAGCCGCGCAGGCCGGCC
GCCGCCTGATCGTGCCGCTGGCCAACGGTGCCGAGGCCGCCATCGCCGGCCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGTGCCACGCTCAATGGCACCCAGAAGGCGCCCGCCGCCGAACTGGCGGTGCAAGCGCTCGGCGCACGCGC
CCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCCCGCCGCGCGCTGGAAATCGCTGCCGCTGGCAGTCACCATC
TTTTGCTGGTCGGTAGCCCTGGCTGCGGCAAGACTCTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGAAGCCAGCGAG
GCCGAAGCGCTGGAAACCGCTGCCATTACCTCCATCAGCGGTCGCGGACTGGATCTTGCGCGCTGGCGGCAACGCCCCTA
TCGGGCACCGCATCACACTGCCAGCGCGGTCGCCTTGGTGGGCGGCGGCACACATCCACGTCCTGGCGAGATTTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAATTGCCCGAGTGGCAACGCCAAACGCTGGAAGTGCTGCGCGAACCGCTCGAA
TCGGGCCTGGTCACCATCTCACGCGCCGCGCGCAGTGTGGATTTCCCGGCAAGATTTCAATTGGTCGCCGCAATGAATCC
ATGCCCGTGCGGGTGGGCCGGCGATGGCAGTGGGCGTTGTCGTTGCAGCAGCGACACCATCGTCCGTTATCGCAGCCGGA
TCTCCGGGCCGCTGCTGGACCGCATCGATCTGCACGTTGAAGTTCCGCGCCTGCCACCGCAGGCCCTGCGCAACGGCAAC
GTCGGCGAGGACAGCGCCAGCGTGCGCACCCGCGTAGTCGCAGCACGCGTCCTGCAGCTGGCACGTGCCGGCGTGCCCAA
CGCACAACTAGACCAGGCGCAAACCGATCACCACTGCCGCCTGCGCAACGACGATCAGTTGCTGCTGGAACGCGCGATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GTCATTGCCACCCACCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCGGTGGGTACAGCAAGCGCGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7EX92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.842

99.802

0.557
  comM Glaesserella parasuis strain SC1401

55.05

99.802

0.549
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.896

99.012

0.514
  comM Legionella pneumophila strain ERS1305867

51.896

99.012

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.26

100

0.464

Multiple sequence alignment