Detailed information NTG1131851

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: H1W84_RS08820
• Genome accession: NZ_LR822036
• Coordinates: 1695010..1695438 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1055
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1690010..1700438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W84_RS08780 (STHERMO_1953)	-	1690147..1690590 (-)	444	WP_011681680.1	hypothetical protein	-
H1W84_RS10170 (STHERMO_1954)	-	1690664..1691089 (-)	426	WP_014608739.1	CPBP family intramembrane glutamic endopeptidase	-
H1W84_RS10175 (STHERMO_1955)	-	1691046..1691321 (-)	276	WP_011681681.1	hypothetical protein	-
H1W84_RS08790 (STHERMO_1956)	-	1691333..1691530 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
H1W84_RS08795 (STHERMO_1957)	-	1691779..1692972 (-)	1194	WP_014608740.1	acetate kinase	-
H1W84_RS08800 (STHERMO_1958)	comYH	1693028..1693984 (-)	957	WP_014608741.1	class I SAM-dependent methyltransferase	Machinery gene
H1W84_RS08805 (STHERMO_1959)	comGG	1694029..1694346 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
H1W84_RS08810 (STHERMO_1960)	comYF	1694324..1694761 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1W84_RS08815 (STHERMO_1961)	comGE	1694745..1695038 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1W84_RS08820 (STHERMO_1962)	comYD	1695010..1695438 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1W84_RS08825 (STHERMO_1963)	comYC	1695398..1695724 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H1W84_RS08830 (STHERMO_1964)	comYB	1695721..1696821 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1W84_RS08835 (STHERMO_1965)	comGA/cglA/cilD	1696703..1697644 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
H1W84_RS08840 (STHERMO_1966)	-	1697725..1698087 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=1131851 H1W84_RS08820 WP_011226626.1 1695010..1695438(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1055]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1131851 H1W84_RS08820 WP_011226626.1 1695010..1695438(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1055]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38