Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   H1X08_RS01520 Genome accession   NZ_LR822025
Coordinates   287266..289419 (+) Length   717 a.a.
NCBI ID   WP_180482397.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 268903..334284 287266..289419 within 0


Gene organization within MGE regions


Location: 268903..334284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS01440 (STHERMO_0290) - 269338..269694 (+) 357 WP_179972253.1 DUF805 domain-containing protein -
  H1X08_RS10525 (STHERMO_0291) - 269968..270111 (+) 144 WP_014621937.1 hypothetical protein -
  H1X08_RS11080 (STHERMO_0293) - 270185..270316 (+) 132 WP_269473115.1 hypothetical protein -
  H1X08_RS10530 (STHERMO_0294) - 270331..270717 (+) 387 WP_232086248.1 hypothetical protein -
  H1X08_RS10535 (STHERMO_0295) - 270714..270929 (+) 216 WP_011681586.1 hypothetical protein -
  H1X08_RS10540 (STHERMO_0296) - 270895..271323 (+) 429 WP_011681585.1 hypothetical protein -
  H1X08_RS01455 (STHERMO_0297) rsmH 271488..272438 (+) 951 WP_180482393.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  H1X08_RS01460 (STHERMO_0298) ftsL 272441..272761 (+) 321 WP_002948801.1 cell division protein FtsL -
  H1X08_RS01465 (STHERMO_0299) pbp2X 272765..275032 (+) 2268 WP_180482394.1 penicillin-binding protein PBP2X -
  H1X08_RS01470 (STHERMO_0300) mraY 275034..276056 (+) 1023 WP_011227524.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  H1X08_RS01475 (STHERMO_0301) - 276131..277474 (+) 1344 WP_113870481.1 DEAD/DEAH box helicase -
  H1X08_RS01480 (STHERMO_0302) - 277805..278041 (+) 237 WP_179972249.1 Blp family class II bacteriocin -
  H1X08_RS01485 (STHERMO_0303) - 278324..279679 (+) 1356 WP_179972248.1 bifunctional metallophosphatase/5'-nucleotidase -
  H1X08_RS01490 (STHERMO_0304) - 279734..280456 (+) 723 WP_179972247.1 YutD family protein -
  H1X08_RS01495 (STHERMO_0305) rlmN 280460..281629 (+) 1170 WP_180482395.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  H1X08_RS01500 (STHERMO_0306) - 281631..282158 (+) 528 WP_011226503.1 VanZ family protein -
  H1X08_RS10545 (STHERMO_0307) - 282363..282569 (+) 207 WP_011681579.1 hypothetical protein -
  H1X08_RS01510 (STHERMO_0309) - 282757..284514 (+) 1758 WP_100285003.1 ABC transporter ATP-binding protein -
  H1X08_RS01515 (STHERMO_0310) - 284507..286252 (+) 1746 WP_180482396.1 ABC transporter ATP-binding protein -
  H1X08_RS01520 (STHERMO_0315) comA/nlmT 287266..289419 (+) 2154 WP_180482397.1 peptide cleavage/export ABC transporter Regulator
  H1X08_RS01525 (STHERMO_0316) - 289435..290802 (+) 1368 WP_180482398.1 bacteriocin secretion accessory protein -
  H1X08_RS01530 (STHERMO_0317) - 290817..290978 (+) 162 WP_011681573.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  H1X08_RS10550 - 290996..291799 (-) 804 WP_232086948.1 ATP-binding protein -
  H1X08_RS01540 (STHERMO_0319) - 292330..293067 (-) 738 WP_180482400.1 LytR/AlgR family response regulator transcription factor -
  H1X08_RS01545 (STHERMO_0320) - 293318..293494 (+) 177 WP_180482401.1 Blp family class II bacteriocin -
  H1X08_RS01550 (STHERMO_0321) - 293513..293713 (+) 201 WP_011681569.1 hypothetical protein -
  H1X08_RS01555 (STHERMO_0322) - 294069..294299 (+) 231 WP_011226494.1 bacteriocin class II family protein -
  H1X08_RS01560 (STHERMO_0323) - 294306..294467 (+) 162 WP_011681568.1 hypothetical protein -
  H1X08_RS11190 - 295323..295724 (+) 402 WP_011226490.1 hypothetical protein -
  H1X08_RS01565 (STHERMO_0328) - 295975..296217 (+) 243 WP_180482402.1 Blp family class II bacteriocin -
  H1X08_RS01570 (STHERMO_0331) - 296803..297042 (+) 240 WP_021152514.1 Blp family class II bacteriocin -
  H1X08_RS01575 - 297054..297446 (+) 393 WP_084829084.1 hypothetical protein -
  H1X08_RS01580 (STHERMO_0332) - 297475..297654 (+) 180 WP_011681564.1 hypothetical protein -
  H1X08_RS01585 (STHERMO_0333) - 297841..298767 (+) 927 WP_022096485.1 thioredoxin family protein -
  H1X08_RS01590 (STHERMO_0334) - 298932..299228 (+) 297 WP_180482403.1 bacteriocin immunity protein -
  H1X08_RS01595 - 299550..299813 (+) 264 WP_002945924.1 hypothetical protein -
  H1X08_RS01600 (STHERMO_0337) - 299938..300318 (+) 381 WP_180482404.1 bacteriocin secretion protein -
  H1X08_RS01605 (STHERMO_0338) - 300398..302665 (-) 2268 WP_180482405.1 Xaa-Pro dipeptidyl-peptidase -
  H1X08_RS01610 (STHERMO_0339) gla 302786..303649 (+) 864 WP_002951781.1 aquaglyceroporin Gla -
  H1X08_RS01615 (STHERMO_0340) - 303708..304957 (-) 1250 Protein_283 ISL3 family transposase -
  H1X08_RS10555 (STHERMO_0341) - 305155..305319 (-) 165 WP_232086949.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  H1X08_RS01625 - 305801..306556 (+) 756 Protein_285 CppA family protein -
  H1X08_RS01630 (STHERMO_0346) - 306556..307512 (+) 957 WP_002951776.1 serine hydrolase domain-containing protein -
  H1X08_RS01635 (STHERMO_0348) - 307714..308364 (+) 651 WP_180482406.1 ATP-binding cassette domain-containing protein -
  H1X08_RS01640 (STHERMO_0349) - 308361..309116 (+) 756 WP_180482407.1 ABC transporter permease -
  H1X08_RS01645 - 309192..309752 (+) 561 WP_232086950.1 hypothetical protein -
  H1X08_RS01650 - 309966..310560 (+) 595 Protein_290 site-specific integrase -
  H1X08_RS11195 mobV 311040..311548 (+) 509 Protein_291 MobV family relaxase -
  H1X08_RS01660 (STHERMO_0355) - 311554..311895 (+) 342 WP_232086951.1 restriction endonuclease subunit S -
  H1X08_RS01665 (STHERMO_0356) - 312229..312681 (-) 453 WP_180482642.1 GNAT family N-acetyltransferase -
  H1X08_RS01670 - 312732..313514 (-) 783 Protein_294 carbonic anhydrase -
  H1X08_RS01675 (STHERMO_0359) pflB 313780..316088 (-) 2309 Protein_295 formate C-acetyltransferase -
  H1X08_RS01680 (STHERMO_0361) dinB 316366..317469 (+) 1104 WP_180482408.1 DNA polymerase IV -
  H1X08_RS01685 (STHERMO_0362) - 317755..317988 (+) 234 WP_179972230.1 hypothetical protein -
  H1X08_RS01690 (STHERMO_0364) - 318570..319400 (+) 831 WP_180482409.1 transporter substrate-binding domain-containing protein -
  H1X08_RS01695 (STHERMO_0365) - 319788..320534 (+) 747 WP_179973030.1 amino acid ABC transporter permease -
  H1X08_RS01700 (STHERMO_0366) - 320534..321277 (+) 744 WP_179972228.1 amino acid ABC transporter ATP-binding protein -
  H1X08_RS01705 (STHERMO_0367) - 321492..321716 (+) 225 WP_179972227.1 DUF4059 family protein -
  H1X08_RS01710 (STHERMO_0368) trxB 321749..322702 (+) 954 WP_269473120.1 thioredoxin-disulfide reductase -
  H1X08_RS01715 (STHERMO_0369) rsmD 322793..323392 (+) 600 WP_179973963.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H1X08_RS01720 (STHERMO_0370) coaD 323426..323923 (+) 498 WP_179972224.1 pantetheine-phosphate adenylyltransferase -
  H1X08_RS01725 (STHERMO_0371) sepM 323901..324977 (+) 1077 WP_179972223.1 SepM family pheromone-processing serine protease Regulator
  H1X08_RS01730 (STHERMO_0372) - 325071..326326 (-) 1256 Protein_306 ISL3 family transposase -
  H1X08_RS01735 (STHERMO_0374) - 326485..327429 (+) 945 WP_179972222.1 TIGR01212 family radical SAM protein -
  H1X08_RS01740 (STHERMO_0375) - 327426..327974 (+) 549 WP_011226462.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  H1X08_RS01745 (STHERMO_0376) - 327971..328213 (+) 243 WP_011226461.1 hypothetical protein -
  H1X08_RS01750 (STHERMO_0377) - 328222..330288 (+) 2067 WP_179972221.1 cation:proton antiporter -
  H1X08_RS01755 (STHERMO_0379) - 330907..331689 (-) 783 WP_180482410.1 ABC transporter ATP-binding protein -
  H1X08_RS01760 (STHERMO_0380) - 331800..333131 (+) 1332 WP_180482411.1 hemolysin family protein -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80704.58 Da        Isoelectric Point: 7.0163

>NTDB_id=1131191 H1X08_RS01520 WP_180482397.1 287266..289419(+) (comA/nlmT) [Streptococcus thermophilus isolate STH_CIRM_961]
MFRFRRTFVPQIDMRDCGVAALASVAKYYGSDYSLAHLRELAKTNKEGTTALGLVEAAKKIGFETRAIKAEMSLFEMEDV
PYPFIAHVNKDGKLQHYYVIYKNTKDYLIIGDPDPSVKVTKMTKERFEKEWTGITLFMGPEPSYKPHKDKKNGLWDFLPL
IFKQRSLIANIVFASLLVTLINILGSYYLQGILDEYVPNQMKSTLGIISIGLVVTYVLQQMMTFARDYLLTILSQRLTID
VILSYIRHIFELPMSFFATRRTGEVISRFSDANSIIDALASTILSLFLDFSIVIIVGGVLLIQNSNLFKLVLCSVPIYTL
IVFAFMKPFERMNHDVMQSNAMVNSAIIEDINGIETIKSLTSEEVCYQKIDGEFVDYLDNSFRLSKLSILQTSLKQGAQL
ILNVLILWTGAQLVMGNTISIGQLITFNMLLSYFTNPLENIINLQTKLQSAKVANTRLNEVYLIESEFGQSDDTYQEGIA
DGDITVTDLSYKYGFGRDTLTDVSLTIRQGEKISFVGVSGSGKTTLAKMLVNFYQPYKGHIDFNGQNISRIDKKTLRQHI
NYLPQQSYIFSGSVLENLTLGAARGITQADILKACEIAEIRQDIENMPMGFQTELSDGAGLSGGQKQRIALVRALLTKSP
VLILDEATSGLDVLTEKQVIDNLLALKDKTIIFVAHRLSIAERTDRIVVIYQGRVVETGSHQDLMSYPGFYYQLFRK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=1131191 H1X08_RS01520 WP_180482397.1 287266..289419(+) (comA/nlmT) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGTTTCGTTTTCGTAGGACTTTTGTCCCTCAAATAGACATGAGGGATTGTGGAGTTGCTGCCTTGGCATCAGTGGCCAA
GTACTATGGTTCAGATTATTCATTAGCACATCTGCGTGAGTTGGCGAAGACCAATAAAGAAGGGACAACTGCCTTAGGTC
TTGTAGAGGCTGCTAAAAAAATTGGCTTTGAAACGAGAGCTATAAAGGCTGAAATGTCGCTCTTTGAGATGGAAGATGTT
CCTTATCCTTTTATTGCTCATGTTAATAAAGATGGGAAGCTTCAACATTATTATGTTATTTATAAAAACACCAAGGATTA
TCTGATAATTGGAGACCCTGATCCAAGTGTAAAAGTAACTAAAATGACTAAAGAGCGTTTTGAGAAAGAGTGGACAGGTA
TTACTCTTTTTATGGGACCGGAACCCAGTTATAAACCACATAAGGATAAGAAAAATGGACTCTGGGACTTTCTCCCTTTG
ATCTTTAAACAAAGGTCCTTGATAGCTAATATTGTCTTTGCCAGTCTCTTGGTTACTTTAATAAATATTTTAGGTTCCTA
TTATTTACAAGGTATTCTAGACGAATATGTCCCTAATCAAATGAAGTCTACCTTAGGAATTATCTCAATTGGATTAGTTG
TGACCTATGTTTTACAACAAATGATGACTTTTGCAAGAGATTATCTCTTAACCATACTGAGTCAGCGATTGACCATTGAC
GTTATCTTGTCCTACATACGACATATCTTTGAACTCCCAATGTCTTTTTTTGCCACAAGACGTACAGGGGAGGTTATCTC
ACGTTTTAGTGATGCTAACTCTATTATCGATGCTCTGGCTTCGACGATATTATCACTTTTCCTTGATTTCTCTATTGTGA
TTATCGTAGGAGGCGTGTTATTGATACAAAATAGCAATCTCTTCAAGCTAGTTCTTTGTTCGGTTCCAATTTATACCCTT
ATCGTCTTTGCCTTTATGAAACCTTTTGAGCGAATGAATCATGACGTCATGCAGAGTAATGCTATGGTTAATTCAGCCAT
CATTGAGGACATTAATGGGATTGAAACCATAAAGTCACTAACCAGCGAAGAAGTATGCTATCAAAAGATTGATGGTGAGT
TTGTTGACTATCTAGACAATTCTTTTCGCCTTTCTAAGTTATCTATACTACAAACATCATTGAAACAAGGTGCTCAACTT
ATTTTAAATGTACTTATCCTCTGGACAGGTGCTCAGTTGGTGATGGGAAATACCATTTCGATAGGACAATTGATTACTTT
TAATATGTTGCTTTCTTACTTCACGAATCCTTTGGAAAATATCATTAACCTGCAAACCAAGTTACAGTCTGCTAAGGTAG
CTAATACTAGGCTCAATGAGGTCTATCTGATTGAATCAGAGTTTGGACAAAGTGATGATACCTATCAAGAAGGCATTGCG
GATGGAGATATCACTGTTACGGATTTATCTTATAAATATGGTTTTGGTCGTGATACTTTGACTGATGTCAGTTTGACGAT
TAGACAAGGAGAAAAAATCAGTTTTGTTGGTGTCAGTGGATCTGGTAAGACTACTCTAGCTAAAATGTTGGTCAATTTTT
ATCAACCATATAAGGGGCACATAGATTTTAATGGTCAAAATATTAGTCGCATAGACAAGAAAACTCTTCGTCAACATATT
AACTATCTCCCTCAGCAATCCTATATATTTAGTGGTAGTGTTTTAGAAAATCTTACTTTAGGTGCAGCACGGGGTATTAC
GCAAGCTGATATTTTGAAAGCTTGTGAAATAGCAGAAATTCGTCAAGATATTGAAAACATGCCTATGGGGTTTCAGACAG
AGCTGTCTGATGGAGCAGGTCTGTCTGGAGGGCAAAAGCAACGTATCGCTTTGGTGCGTGCACTACTAACGAAATCTCCT
GTACTAATCTTAGATGAAGCAACTAGCGGATTGGATGTTTTGACAGAAAAGCAGGTTATTGATAACCTCCTAGCACTAAA
AGATAAAACGATCATCTTTGTAGCACACAGGCTTAGTATCGCTGAGCGGACCGACCGTATCGTAGTCATTTATCAGGGAC
GCGTAGTGGAGACAGGTTCTCATCAAGACCTGATGTCTTATCCAGGTTTCTATTATCAATTATTTAGAAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

67.787

99.582

0.675

  comA Streptococcus mitis NCTC 12261

66.104

99.163

0.656

  comA Streptococcus pneumoniae Rx1

65.682

99.163

0.651

  comA Streptococcus pneumoniae D39

65.682

99.163

0.651

  comA Streptococcus pneumoniae R6

65.682

99.163

0.651

  comA Streptococcus mitis SK321

65.541

99.163

0.65

  comA Streptococcus pneumoniae TIGR4

65.26

99.163

0.647

  comA Streptococcus gordonii str. Challis substr. CH1

64.286

99.582

0.64


Multiple sequence alignment